Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03016 ATGCTGGATCTCAACCTCAACGCCGATTCCGCCTCCGACGCGCAAATGGAGAGCTCCGGCAGCTTCAATTCCTCTGTCGTCAATGCCGCCGACACCGACGACTCCTGCTCCAACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAACAGCACCACCGCCGGAGAATCCTCCGTTCGCACCATCCAGCTCTTTCCGGATGCAGTATCGCCGGCGTGGCTGGATTTCTCGTCGAAGGTGGATCAGCACGGTGCTCCGCCGGAGCAGAGGATCACTCCCCGGCAACCGCAGGTGAAGAAGAGCCGCCGCGGACCGAGGTCAAGAAGCTCGCAGTATCGCGGTGTTACTTTCTATCGCAGAACCGGAAGATGGGAATCGCACATTTGGGATTGTGGGAAACAGGTGTACTTGGGTGGATTTGACACAGCGCATGCTGCGGCAAGGGCTTATGATCGAGCTGCGATCAAGTTCCGTGGCGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGATGAAGATATAAAGCAGATGAGTAACTTCACGAAGGAGGAGTTTGTGCATATTCTGCGGCGACAGAGCACTGGTTTTTCGAGGGGAAGCTCCAAATACAGGGGTGTTACTCTGCACAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTCTCGGTAAAAAGTATATATATCTTGGGCTATTCGACAGCGAATTAGAGGCTGCAAGAGCATATGATAGGGCCGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCTTATATGAAGGGGAGGTAATTTCCCAGTCTGATAATGAAGATAACAAGCAAAGTCTTGATCTTAACTTGGGCATAGCTCCCCCTTCTTACTCTGATGGTCAAATCAAGAACACACCCAGCAACGGGAGTGGTTTGAATGCTCCCCACAGTTGGGATGATATCCCTGTCGATAAGAGAGTTATGTTTGAGCACTCTGGATCAAGATCACTGAATGTTCAGCCATCTCATGGCTTCTCCATAGCATCTGGGCATCATCCTTCCGTCTGGAATGGTAGCAATTTTTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCATGCCATCAAATTGGGCATGGCAAGTCCAAGGTCCTTATGGCGGGGCAGCTCTTACTCCACCCTTCTCTACTGCAGCATCATCAGGATTCCCTTCTTCAACAATAATACCATCAGCTGCGGATACTCAAATTCGTTTTCCAAACATGACATTCCTCCACTCACATTTTCCACCATCAATCACCAACTCCGGCACCATATCCCCTTTCTTCTGCGGTAGCTGA 1344 0.5082 MLDLNLNADSASDAQMESSGSFNSSVVNAADTDDSCSNGDAVAYNFAILNNSTTAGESSVRTIQLFPDAVSPAWLDFSSKVDQHGAPPEQRITPRQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSLYEGEVISQSDNEDNKQSLDLNLGIAPPSYSDGQIKNTPSNGSGLNAPHSWDDIPVDKRVMFEHSGSRSLNVQPSHGFSIASGHHPSVWNGSNFFPIYEETAIEKRMEAAPMPSNWAWQVQGPYGGAALTPPFSTAASSGFPSSTIIPSAADTQIRFPNMTFLHSHFPPSITNSGTISPFFCGS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03016 447 ProSiteProfiles AP2/ERF domain profile. 112 168 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 FunFam AP2-like ethylene-responsive transcription factor 111 170 - -
Pumo5g03016 447 FunFam AP2-like ethylene-responsive transcription factor 203 263 - -
Pumo5g03016 447 SUPERFAMILY DNA-binding domain 111 170 IPR016177 GO:0003677
Pumo5g03016 447 CDD AP2 203 263 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 MobiDBLite consensus disorder prediction 79 113 - -
Pumo5g03016 447 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Pumo5g03016 447 Gene3D AP2/ERF domain 203 262 IPR036955 GO:0003700|GO:0006355
Pumo5g03016 447 PRINTS Ethylene responsive element binding protein signature 205 216 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 PRINTS Ethylene responsive element binding protein signature 243 263 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 CDD AP2 112 170 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 ProSiteProfiles AP2/ERF domain profile. 204 261 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 SUPERFAMILY DNA-binding domain 203 262 IPR016177 GO:0003677
Pumo5g03016 447 SMART rav1_2 204 267 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 SMART rav1_2 112 174 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 294 - -
Pumo5g03016 447 Pfam AP2 domain 203 253 IPR001471 GO:0003700|GO:0006355
Pumo5g03016 447 Pfam AP2 domain 112 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03016 Pumo-Chr5 78167741 78170930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03016 92 328 AP2-EREBP Transcription Factor Family AT4G36920 69.167 6.55e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo5g03016 AP2 9.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03016 K09284 - gmx:100808212 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03016 5 78167741 78170930 Pumo5g03016 5 78167741 78170930 ECH