Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03008 ATGAATATTGAGGAAGCAGATAGGGTGGTCATTGCCAAACCAGTTGCTTCAAGGCCTACTTGTTCTACTTTCAGATCTTTCTCAGAGCTCCTAGCAGGTGCAATCGATGCTTCTCCCGCTATTGCATCTTCTCAAAGTACAGTTTCTGCCATTAGACCCAAGACAGTGAGGTTCAAGCCAGCAGTGAATCAACCCCCTGCTGGGTTTGTTTCTTCTCAGGCTGATACTTTTGGAGCTGCACTCAGTAACTCTTCTGACAAGAGTCCTAAACTTGACACCAAACAGTCCCTCATATACAAGCCAACGGCAAAACTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGTACTAGTCAGCAGCAAACACGGCAATCAATGGAGGCCAATTTTCAACATTCCATCCATGAAAAATTCAGAACCAACACGAGCTCGCATCTTGATCAGAGTATTACCCCGCAAGCAGAAATGAATCAGAGCAGTGAGCCTAGTAAGATGGTGCAGCAGAACATGGAGGAGGACCAAAAGGCTTTAACATCCTCAGTGAATTGTGATCGACCATCTTATGATGGATACAATTGGAGGAAATATGGTCAGAAGCAAGTAAAAGGGAGCGAGTATCCGCGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAGAAGAAGGTTGAAAGATCCTTTGATGGGAACATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCGAAGCCACAGCTTCCTAAGCGAAACTCGGCAGCAGGGACACAAGGATCAGGGGTTGTGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAATGAAGGCAATGAAGTTAGAATTGAGAACACAGGACAGTCTGTGCATTCAGATTATTATGTCAAAGTTCAACAGCCTCATGATTCTGCTCTAAATGTTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAACTCGTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGATTTGAGGCACAGGAAGATGAATCCAGAAGTAAAAGAAGGAAAAATGAGAATCGATTCAATGAAGCAGCATTATCAGAGGAAGGTTTAGTAGAGCCACGGATTGTGATGCAAAGTTTTACGGATTCTGAAATACTTGGAGATGGCTTTCGATGGAGGAAATATGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTACTATAGATGTACTACTATAAAGTGTAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACTACATATGAGGGAAAGCACAATCATGAGATGCCACTGAAGAACACAGGAAATGTGGCTTCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGA 1413 0.4338 MNIEEADRVVIAKPVASRPTCSTFRSFSELLAGAIDASPAIASSQSTVSAIRPKTVRFKPAVNQPPAGFVSSQADTFGAALSNSSDKSPKLDTKQSLIYKPTAKLVSKTTVSLLANMGNCSTSQQQTRQSMEANFQHSIHEKFRTNTSSHLDQSITPQAEMNQSSEPSKMVQQNMEEDQKALTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGNIAEIVYKGEHNHSKPQLPKRNSAAGTQGSGVVSDGMVQDMWSNSHSERNEGNEVRIENTGQSVHSDYYVKVQQPHDSALNVGATNAGGGSTENSCGLSGECEEGSKGFEAQEDESRSKRRKNENRFNEAALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTTIKCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGNVASERDSQASLSKDKP 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03008 470 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 129 460 IPR044810 GO:0003700
Pumo5g03008 470 FunFam WRKY transcription factor 178 252 - -
Pumo5g03008 470 MobiDBLite consensus disorder prediction 341 361 - -
Pumo5g03008 470 SUPERFAMILY WRKY DNA-binding domain 191 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 ProSiteProfiles WRKY domain profile. 383 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 MobiDBLite consensus disorder prediction 441 470 - -
Pumo5g03008 470 FunFam WRKY transcription factor 57 374 448 - -
Pumo5g03008 470 MobiDBLite consensus disorder prediction 253 270 - -
Pumo5g03008 470 MobiDBLite consensus disorder prediction 319 361 - -
Pumo5g03008 470 MobiDBLite consensus disorder prediction 319 334 - -
Pumo5g03008 470 SUPERFAMILY WRKY DNA-binding domain 381 448 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 Gene3D WRKY domain 176 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 Gene3D WRKY domain 374 449 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 Pfam WRKY DNA -binding domain 390 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 Pfam WRKY DNA -binding domain 194 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 SMART WRKY_cls 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 SMART WRKY_cls 388 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 ProSiteProfiles WRKY domain profile. 194 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03008 470 MobiDBLite consensus disorder prediction 245 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03008 Pumo-Chr5 78094487 78102620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03008 92 449 WRKY Transcription Factor Family AT2G37260 45.767 2.01e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g03008 WRKY 7.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03008 - - gmx:100794069 874.774