Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03001 ATGGTTAGATCCTGCTGGAGACCAGCTGTGGTGGGTGATGATGGAGATGTGAATGGTCGAGTTGAGGGGCTGCTATGGTACAAGGATTTGGGGAACCATCTTTATGGGGATTTCTCAATGGCTGTGATTCAAGCTAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCTGGACCCTTGACTTCTGACTATTTGGGTCCTCAAGGAACCTTTATAGGTGTATATGATGGTCATGGTGGCACCGCAGCCTCGCAGTTTGTCAGTGACAATCTTTTCTGCAATTTCAAGAATTTTGCTGCTGAACATCAAGGCATTTCGGAGAATGTTATCCGAAGGGCCTATTCGGCAACAGAAGAGGGTTTTCTGTCTGTTGTGAGGAAACAGTGGCTAAGCAAGCCACAGATTGCATCCGCAGGAACATGTTGTTTGGCGGGGATAATTTGCAATGGCATGCTATATGTTGCAAATGCGGGAGATTCGAGGGCGGTGTTGGGGAGAGTAGAGAGAGCAACAAGGGAAACAACAGCTATCCAATTGTCTGCAGAGCATAATGTTAACATCCCAACTGAGAGAGATGAAGTTCGGACAAAGCACCCTTATGATCCACAAATCGTGGTTATGAAACACAATGTTTGGCGTGTCAAAGGCCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGACGAATTTAACAGGGAGCCTCTACCGAACAAGTTTAGACTACCTGAACCCTTCTTTAAGCCAATTCTTAGTTATGAACCAGCGATATCAGTGCATAGACTTCATCCTGAAGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCAACTTAGCAACCAAGAGGTTGTGGATATAGTCAGCAATAGCCCACGAAATGGAATTGCTAGGCGGCTTGTGAAAGCTGCACTTCGAGAAGCAGCTAGGAAGAGAGAAATGAGAGTCTCGGACCTTCAAAAGATTGAACAAGGAGTGAGGAGACACTTCCACGATGATATTACAGTCATTGTTGTATTTCTAAATCACAAACTCATTGATAATAGCTCTCTCTTGGCTTCTCCTCTTTCAATCAGAGGAGGTGGCTCAGCCAATTTTTAG 1113 0.4438 MVRSCWRPAVVGDDGDVNGRVEGLLWYKDLGNHLYGDFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFIGVYDGHGGTAASQFVSDNLFCNFKNFAAEHQGISENVIRRAYSATEEGFLSVVRKQWLSKPQIASAGTCCLAGIICNGMLYVANAGDSRAVLGRVERATRETTAIQLSAEHNVNIPTERDEVRTKHPYDPQIVVMKHNVWRVKGLIQVSRSIGDAYLKKDEFNREPLPNKFRLPEPFFKPILSYEPAISVHRLHPEDQFLIFASDGLWEQLSNQEVVDIVSNSPRNGIARRLVKAALREAARKREMRVSDLQKIEQGVRRHFHDDITVIVVFLNHKLIDNSSLLASPLSIRGGGSANF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03001 370 PANTHER PROTEIN PHOSPHATASE 35 343 IPR015655 GO:0004722|GO:0006470
Pumo5g03001 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Pumo5g03001 370 CDD PP2Cc 35 345 IPR001932 -
Pumo5g03001 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Pumo5g03001 370 Gene3D - 28 354 IPR036457 -
Pumo5g03001 370 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Pumo5g03001 370 SMART PP2C_4 31 343 IPR001932 -
Pumo5g03001 370 FunFam Phosphatase 2C family protein 26 355 - -
Pumo5g03001 370 Pfam Protein phosphatase 2C 69 314 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03001 Pumo-Chr5 78030074 78031934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03001 1 366 PP2C-type Phosphatase Gene Family AT3G12620 66.938 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03001 K01102 - gmx:100815902 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03001 5 78030074 78031934 Pumo5g03001 5 78030074 78031934 ECH
Pumo5g03001 5 78030074 78031934 Pumo3g02616 3 39422817 39425587 PCT