Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02994 ATGTCTCGTCTCGACGACAGGCTTCCTTTCTTCAACCAATCCATGGAGCTAGTCCAACCCCCAACCCGAACCAGATCCAAAACCCTAGGCGACCTCCTTAAACGCGTCGAAGACGCTCAAAACGACACTCCTCCTGCACCACCACCCCACCATGTTCTCGACCTCTCCTCCTCCTCCTCCTCCACCACCCACCCCTTTGTCCTCTCCTTCACCAACTTAATCTACAGCGTCAAGCTCCGCCGCAAGTTCACTTTTTTTCCCGCCACCACCGCTTCCACGCCCGACCACGAAACCAAACCCAACGGCACCAAGACTCTCCTCAACGACATCTCCGGCGAGGCCCGGGACGGCGAGATCATGGCCGTCCTCGGCGCCAGCGGCTCCGGAAAGTCCACTCTAATTGACGCCCTCGCCGATAGGATCTCAAAAGAAAGCCTCAAAGGCATGGTCACCTTAAACGGCGACGTTTTGGAATCGAGTCTTTTGAAGGTTATCTCCGCTTACGTCATGCAAGACGACCTCCTCTTCCCCATGCTCACCGTGGAAGAAACCCTAATGTTCGCCGCCGAGTTCAGACTCCCTCGCTCTTTCTCCAAATCCAAGAAAAGGGCTCGGGTCCAAGCCCTCATCGACCAGCTCGGCCTCCGCTCCGCCGCCACCACCGTCATCGGCGACGAGGGCCACCGCGGTGTCTCCGGCGGAGAACGTCGCCGCGTCTCCATCGGAACCGACATCATCCACGACCCCATCGTGCTCTTCCTCGACGAACCAACCTCCGGCCTCGACTCCACCAGTGCCTTCATGGTCGTGAAGGTGCTGCAGCGAATCGCTCAGAGCGGAAGCATCGTCATCATGTCCATTCACCAACCTAGCTACAGAATCTTGAGCCTTTTAGACCACTTGATCTTCCTCTCCCACGGTAACACCGTCTACAGCGGCTCTCCGGCGAACCTCCCCACCTTCTTCTCCGAGTTCGGCCACCCCATACCGGAGAACGAGAACCGCACCGAATTCGCACTAGACATAATCCGCGAACTCGAACAAGAACCGGCCGGTACCAAGAGTTTAGTGGACTTCAGCAAATCATGGCAGCTGAAAAACAAAAACTCGGCCCAAGACGGGCCCAAACCGAAACTATCTCTCAAGGACGCCATCAGCGCTAGCATTTCACGGGGCAAACTCGTGTCCGGCGCTAACAACTCAACGGCGTTAGTTTCAGTTCCCGCCTTTGCGAATCCGTTTTGGATGGAGATGTTGGTGATAGGAAAACGGTCTTTACTTAACTCGCGGAGGATGCCGGAGTTATTCGGGATTCGTTTGGGTGCAGTTTTGGTGACGGGGGCGATATTGGCAACAATCTTTTGGCACCTGGACGATTCTCCAAAAGGAGTTCAAGAGCGCGTGGGGTTCTTCGCGTTCGCCATGTCCACCACGTTCTACACGTGCGCGGAAGCCATGCCGGTGTTCCTCCAAGAGCGTTACATCTTCATGAGAGAAACCGCATACAACGCCTACCGTCGCTCATCCTACGTCCTCGCGCACGCAATCATTTCCCTCCCTTCATTGCTCTTCCTCTCCTTCGCCTTTGCGGCCACAACATTTTGGGCCGTGGGCTTGGCCGGTGGCAGTTCGGGCTTTCTGTTTTACTTCCTGACCATCGTGGCCTCGTTTTGGGCCGGGAACTCGTTCGTGACGTTCCTGTCCGGTGTGGTGTCGCACGTGATGATAGGGTTCACTGTGGTGGTTGCGATCCTGGCTTATTTTCTCCTCTTCAGCGGGTTCTTCATCAGCAGGGACAGGATCCCTCCGTACTGGATATGGTTCCACTACGTGTCGCTGGTGAAGTACCCGTACGAGGGAGTGTTGCAGAACGAGTTCGATGTGAAGTCTCCGAGGTGCTTTGTGAGAGGGATTCAGATGTTCGACAACACGCCGTTGGGGATGGTGCCGGAGGAGCTGAAGGTGGAGCTGCTGAAGAGCATGAGCAGCACGCTGGGAATTAACATCACGGGGTCCACCTGCGTGATCACCGGAGAGGATGTGCTCAAGCAGCAGGGGATCACGCAGCTGAGCAAGTGGGACTGCTTGTGGATCACGGTTGCTTGGGGATTCTTCTTTCGCTTCCTCTTTTATTTGGCGCTGCTCTTTGGGAGCAGGAACAAGAGGAGGTAG 2172 0.5603 MSRLDDRLPFFNQSMELVQPPTRTRSKTLGDLLKRVEDAQNDTPPAPPPHHVLDLSSSSSSTTHPFVLSFTNLIYSVKLRRKFTFFPATTASTPDHETKPNGTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALADRISKESLKGMVTLNGDVLESSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSFSKSKKRARVQALIDQLGLRSAATTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILSLLDHLIFLSHGNTVYSGSPANLPTFFSEFGHPIPENENRTEFALDIIRELEQEPAGTKSLVDFSKSWQLKNKNSAQDGPKPKLSLKDAISASISRGKLVSGANNSTALVSVPAFANPFWMEMLVIGKRSLLNSRRMPELFGIRLGAVLVTGAILATIFWHLDDSPKGVQERVGFFAFAMSTTFYTCAEAMPVFLQERYIFMRETAYNAYRRSSYVLAHAIISLPSLLFLSFAFAATTFWAVGLAGGSSGFLFYFLTIVASFWAGNSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPPYWIWFHYVSLVKYPYEGVLQNEFDVKSPRCFVRGIQMFDNTPLGMVPEELKVELLKSMSSTLGINITGSTCVITGEDVLKQQGITQLSKWDCLWITVAWGFFFRFLFYLALLFGSRNKRR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02994 723 SMART AAA_5 116 331 IPR003593 GO:0016887
Pumo5g02994 723 MobiDBLite consensus disorder prediction 38 62 - -
Pumo5g02994 723 Pfam ABC transporter 107 259 IPR003439 GO:0005524
Pumo5g02994 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 331 IPR003439 GO:0005524
Pumo5g02994 723 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524|GO:0016887
Pumo5g02994 723 Pfam ABC-2 type transporter 288 418 IPR043926 GO:0140359
Pumo5g02994 723 FunFam ABC transporter G family member 6 96 322 - -
Pumo5g02994 723 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 56 711 - -
Pumo5g02994 723 Gene3D - 95 322 IPR027417 -
Pumo5g02994 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 323 IPR027417 -
Pumo5g02994 723 Pfam ABC-2 type transporter 419 626 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02994 Pumo-Chr5 77976824 77979439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02994 106 291 Calmodulin-binding Proteins AT2G36910 30.159 3.20e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02994 K05681 - gmx:100803426 1265.75