Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02979 ATGGAGACGCAGCGGATTATCGAGTTTCCGCATAGGAACATGGACAAGAGGCCAAGGAAGAAGCAACGTTTAACATGGGACATGCACATGCCTCCTCCTCCTCCTCCTCCACCGAAGTTGGAGGTTCTTCCTACAATGTATTGCAAGCAGGAGGTTGGGAATGGGGTGGTTCCAAATCATGCTTATCCACCCGTGTTTTACAGGGGAATGCCTCACAATGGATCACCCCCGTGGAGGCCTGATGATAAAGACGGTCACTATGTCTTTGCCGTTGGTGAAAATTTAACGCCTCGATACAAAATTCTCAGTAAAATGGGTGAAGGAACTTTTGGCCAAGTGTTGGAATGTTTTGACAATGAAAAGAAAGAATTTGTGGCAATTAAAATTGTTCGCTCCATAAATAAGTACCGTGAGGCTGCAATGACTGAAATTCAAGTCTTGCTGAGGCTAGCCAATCATGATGTTGATGGTGCATGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTAATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTGTCTCGTCAGAATTCATTAAAGTGCCAGACTATAAGTTTCTATCACGGAACACAAAAGATGGCTCCTATTTCAAGAATGTACCCAAGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACATCATTTGAACATCAGGATCACAGTTATGTTGTTTCAACAAGACACTATCGTGCACCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGTGATCTTTGGAGTGTGGGCTGCATACTGGTTGAGCTTTGCTCTGGAGAGGCACTATTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTCTAGGGCCACTACCTCCCCATATGGTGGTCAGGGCTGATCGTCGAGCTGAGAAGTATTTTAAAAGAGGTGCACGATTAAGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGATTGCCGAACCTCATAATGCAACATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTGCAAGGGCTCCTAAGGTACGACCCTTCAGAACGGCTTAAAGCTAAGGAAGCATTGAGACACCCCTTCTTCTTCACAAGAGATACTAAAAGATATGGCTACCCTTTATAA 1320 0.4311 METQRIIEFPHRNMDKRPRKKQRLTWDMHMPPPPPPPPKLEVLPTMYCKQEVGNGVVPNHAYPPVFYRGMPHNGSPPWRPDDKDGHYVFAVGENLTPRYKILSKMGEGTFGQVLECFDNEKKEFVAIKIVRSINKYREAAMTEIQVLLRLANHDVDGACCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVALMHDLCLIHTDLKPENILLVSSEFIKVPDYKFLSRNTKDGSYFKNVPKSSAIKLIDFGSTSFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVVRADRRAEKYFKRGARLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSERLKAKEALRHPFFFTRDTKRYGYPL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02979 439 SUPERFAMILY Protein kinase-like (PK-like) 86 430 IPR011009 -
Pumo5g02979 439 Pfam Protein kinase domain 99 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02979 439 Gene3D Transferase(Phosphotransferase) domain 1 153 427 - -
Pumo5g02979 439 FunFam Serine/threonine-protein kinase AFC2 86 179 - -
Pumo5g02979 439 ProSiteProfiles Protein kinase domain profile. 99 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02979 439 FunFam Serine/threonine-protein kinase AFC2 175 427 - -
Pumo5g02979 439 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 429 - -
Pumo5g02979 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Pumo5g02979 439 Gene3D Phosphorylase Kinase; domain 1 86 179 - -
Pumo5g02979 439 SMART serkin_6 99 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02979 439 CDD PKc_CLK 86 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02979 Pumo-Chr5 77684330 77688968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02979 98 435 Core Cell Cycle Gene Families AT3G54180 28.571 1.65e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Pumo5g02979 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02979 K08287 - gmx:100808061 866.685