Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02976 ATGGTAGCAATGAAGAGACAGAGAGATAATGAAGGGTCAGAGAGCTTAGATTTGGTAAAATGTCTTGCGCTGTTTTCTTGCCCACAAGAAAACACCAAGGCACAAGAGAAAAGTTTTGGCTCTGTGGAATTTGAGTGCAAGACTTGCAACCGCAAGTTCTCTTCTTTTCAAGCACTGGGAGGGCACAGAGCAAGCCACAAGAGGCAGAAGCTAGAGGGGGAAGAACTGAAAGAACAGGCCAAAAGTCTTAGCTTGTGGAACAAACCCAAAATGCACGAGTGCTCAATTTGTGGCCTTGAATTCTCTCTGGGCCAGGCTTTGGGAGGGCACATGAGAAAACACAGAGCTGCACTCAACGAAGGGTTTCCTGTTATTCCTTCAATCGACCAAGTTATTGCGAAAATCCCAGTTCTCAAAAGGTCGAATAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACTTGTAG 468 0.4594 MVAMKRQRDNEGSESLDLVKCLALFSCPQENTKAQEKSFGSVEFECKTCNRKFSSFQALGGHRASHKRQKLEGEELKEQAKSLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRAALNEGFPVIPSIDQVIAKIPVLKRSNSTRVMCLDLELHL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02976 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Pumo5g02976 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Pumo5g02976 155 SMART c2h2final6 44 66 IPR013087 -
Pumo5g02976 155 SMART c2h2final6 92 114 IPR013087 -
Pumo5g02976 155 Gene3D Classic Zinc Finger 41 114 - -
Pumo5g02976 155 Pfam C2H2-type zinc finger 44 69 - -
Pumo5g02976 155 Pfam C2H2-type zinc finger 92 116 - -
Pumo5g02976 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pumo5g02976 155 PANTHER ZINC FINGER PROTEIN ZAT5 20 153 - -
Pumo5g02976 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Pumo5g02976 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02976 Pumo-Chr5 77670454 77671226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02976 4 153 C2H2 Transcription Factor Family AT2G37430 45.912 4.13e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g02976 zf-C2H2_6 8.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02976 - - gmx:100500607 294.278