Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02975 ATGAAGAGACAGAGAGATTTCGAGGGGTTTGAGAGCATAGATTTGGCAAATTGCCTAATGCTTCTGTCTCGTCCCCAACCAAAAAAATTTGAGGCTGTGGAATTTGAGTGCAAGACATGCAACCGCAAGTTCTCGTCCTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAAGGGGATGAACTCAAAGCACATGCTATATCTCTAAGTTTGGGCAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAAGAATTCTCGTTGGGACAGGCACTTGGGGGTCACATGAGAAGGCACAGAGCTAACATCAACGAAGATTTTTCCTCAATAAAACAGGTTGTTACACAAGTACCAGTTTTGAAAAGATCGAATAGCACGAGGGTAATTAAGGGCTTGGACTTGAACCTAACACCGCTCGAGAATGACTTGAAGTTGTTGTTTGGAAAGATGGCACCGAATGCTGCTGCCTTAGCCTGA 495 0.4485 MKRQRDFEGFESIDLANCLMLLSRPQPKKFEAVEFECKTCNRKFSSFQALGGHRASHKRSKLEGDELKAHAISLSLGNKPKMHECSICGQEFSLGQALGGHMRRHRANINEDFSSIKQVVTQVPVLKRSNSTRVIKGLDLNLTPLENDLKLLFGKMAPNAAALA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02975 164 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Pumo5g02975 164 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Pumo5g02975 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Pumo5g02975 164 SUPERFAMILY beta-beta-alpha zinc fingers 35 105 IPR036236 -
Pumo5g02975 164 PANTHER ZINC FINGER PROTEIN ZAT5 11 148 - -
Pumo5g02975 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Pumo5g02975 164 Pfam C2H2-type zinc finger 35 59 - -
Pumo5g02975 164 Pfam C2H2-type zinc finger 83 107 - -
Pumo5g02975 164 Gene3D Classic Zinc Finger 32 105 - -
Pumo5g02975 164 SMART c2h2final6 35 57 IPR013087 -
Pumo5g02975 164 SMART c2h2final6 83 105 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02975 Pumo-Chr5 77661247 77661984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02975 1 155 C2H2 Transcription Factor Family AT2G37430 50.000 1.72e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g02975 zf-C2H2_6 7.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02975 - - gmx:100806997 293.893