Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02968 ATGGCTTTTATGTCTGGAGTTCAGCGTCTGCTTCGCCACACCCCACTCGTTCATTCCCACTATGCTTCCATTCGTCTCAGCTCAACTCTCACTTCACCCAAACTTTTCGTCAGCGGTCTTTCTAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCTTTTGGGCAGTTGGTTGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCGAAGGGATTTGCTTTTGTAACTTATACAAGCATAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCCAGATCTCCCCAGCAATCACAGTCTCAACCCTCTGAAACAGGTTTCACTGTTAACAAAACAGTTGGGTGGTGTGGTTGA 420 0.4381 MAFMSGVQRLLRHTPLVHSHYASIRLSSTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTSIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRSPQQSQSQPSETGFTVNKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02968 139 MobiDBLite consensus disorder prediction 110 139 - -
Pumo5g02968 139 PANTHER NUCLEOLAR PROTEIN 8 27 138 - -
Pumo5g02968 139 SUPERFAMILY RNA-binding domain, RBD 31 129 IPR035979 GO:0003676
Pumo5g02968 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Pumo5g02968 139 MobiDBLite consensus disorder prediction 114 132 - -
Pumo5g02968 139 Gene3D - 25 132 IPR012677 -
Pumo5g02968 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Pumo5g02968 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Pumo5g02968 139 FunFam RNA binding protein 20 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02968 Pumo-Chr5 77450768 77453452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02968 35 126 Eukaryotic Initiation Factors Gene Family AT3G16380 37.895 3.50e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02968 - - gmx:100306326 250.366