Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02961 ATGGCGGCGTCGCGGCGTCTCCGGGACCTCCAATCCCAATCGGCGAACAAGATCTGCGTGGACTGTTCCCAGAAGAACCCGCAATGGGCGTCGGTATCCTACGGCGTGTTCATGTGCCTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTGCGATCCGTCACCATGGACTCCTGGTCTGAAATCCAGATCAAGAAGATGGAAGCCGGAGGCAACGACAAGCTCAACGCCTTCCTCGCCCAATACGGCATCCCCAAGGAAACCGACATCGTCGCTAAATATAATTCCAACGCCGCCGCCGTCTACCGCGACCGCATCCAGGCCATTGCCGACGGCCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGGCCGTTCGCTCCTCCGCCGCCTCCAAGGGCAAGCCGCCGCTCGCGGCTAACAACAACGGCGGATGGGATAATTGGGACGCTGACGACGGCTTTGGATCCGCCAGGGGCGGCTCGGATCTCCGAAGGAACCAGTCCACCGGCGATGTGAGGGGGTTCGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCGACGGAGGATATTTACACGCGCGCTCAATTGGAGGCCTCTGCTGCTAATAAGGAAGAGTTCTTCGCGAGGAAGAGGGCGGAGAATGATTCGCGACCGGAGGGGCTTCCCCCGTCGCAGGGTGGCAAGTATGTTGGATTCGGATCTGGCCCTCCCCCGACCCAGATGAGTAATCAGCAAAACGATTATTTCTCTGTCGTTTCTCAGGGATTCGGTAAATTATCGTTGGCTGCTGCTTCTGCGGCTCAGTCTGCTGCTAATGTTGTTCAGGCCGGGACAAAAGATTTCACTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACATAGGACATGGGGTATCATGAGAGGGGTCATGGCAATGGCTTCACAAAAGGTTGAGGAATACACTAGAGATAACCCAAATTGGACGTCTGATAACTGGCAACGAAATGAAAATAGTAAAAATGGTTTCTATCAGGAGTTCAATCAAGAGAATAAAGGCTGGAATTCTTCTTCTACCAGAGAAGGACGACAACATTCTTCAGGTGGACAAACTAATACTTATAACTCAAGCTCTTGGGATGATTGGGACCACAACGGTTCTAGGAAGGAAGAACCAGCTACAGGATCATTTTCTCAGTCATCAGGTGGGAAGTCTGATACTTATAACTCGAGCTCTTGGGATGATTGGGACCAGGAAGATACAAGAAAGAAAGAACCAGCTAAAGGGTCAGCTGCCCATAGCAATGATGGTTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATCTATGGGAATGCATCTAATAATAAAGCTGTTGGTCATAATGACAAGTCGGGTGTTGCCTGGACAGGAGGAGGCTTTCTCTAA 1479 0.5274 MAASRRLRDLQSQSANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIPKETDIVAKYNSNAAAVYRDRIQAIADGRPWRDPPVVKEAVRSSAASKGKPPLAANNNGGWDNWDADDGFGSARGGSDLRRNQSTGDVRGFGGGGSVARSKSTEDIYTRAQLEASAANKEEFFARKRAENDSRPEGLPPSQGGKYVGFGSGPPPTQMSNQQNDYFSVVSQGFGKLSLAAASAAQSAANVVQAGTKDFTAKVKEGGYDYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMASQKVEEYTRDNPNWTSDNWQRNENSKNGFYQEFNQENKGWNSSSTREGRQHSSGGQTNTYNSSSWDDWDHNGSRKEEPATGSFSQSSGGKSDTYNSSSWDDWDQEDTRKKEPAKGSAAHSNDGWAGWDNAKDDGFDDIYGNASNNKAVGHNDKSGVAWTGGGFL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02961 492 MobiDBLite consensus disorder prediction 429 444 - -
Pumo5g02961 492 Gene3D Arf GTPase activating protein 1 128 IPR038508 -
Pumo5g02961 492 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Pumo5g02961 492 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Pumo5g02961 492 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Pumo5g02961 492 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Pumo5g02961 492 MobiDBLite consensus disorder prediction 364 395 - -
Pumo5g02961 492 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Pumo5g02961 492 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
Pumo5g02961 492 MobiDBLite consensus disorder prediction 131 191 - -
Pumo5g02961 492 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 110 IPR001164 GO:0005096
Pumo5g02961 492 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Pumo5g02961 492 CDD ArfGap_ArfGap1 3 117 - -
Pumo5g02961 492 MobiDBLite consensus disorder prediction 405 428 - -
Pumo5g02961 492 MobiDBLite consensus disorder prediction 364 492 - -
Pumo5g02961 492 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 412 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02961 Pumo-Chr5 77351482 77356013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02961 5 91 C2H2 Transcription Factor Family AT4G21160 50.000 2.34e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02961 K12492 - gmx:100778302 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02961 5 77351482 77356013 Pumo5g02961 5 77351482 77356013 ECH