Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02946 ATGGTGCAAACCGTCAAAAATCCCTTTCGTCCTTTAGCTTCGCATTATTCGGAGGGAGACATCTTATCTCTGTGGGTATTTGTGAATCGTGGCTGCTCTCTTTGTTCCAAAAGCCAGAGAGCACAACACCAAATCCAACACACCACACGTTCTTCTTCTGCAACAAAAATATCACAACACAACACAACACAACCACCATGCTCAACTAGCTCCAATCCAACTGTATATTTCGATATTCAAATGGACGACGACCACGAATACCCTACTCTCACGCCTACAGGGTTACCTCGCCAAAAGAAACCCTCCATTGCAGACGACGACGACATCATGGAGCTGCTATGGCACAACGGCCAGGTTGTGATGCACAGTCAGAACCAGCGTTCTCTGAGAAAACTGCCGCCGGCGAGAAACTCCGACCATGTCTCTCCCGCCGGTCCTTCCACGGCGAGGGAGATTCGACCGCTGGTGGAGCATTTCAATCAGCATCTCTTCATGCAGGAAGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACGACAACGATCCTCCCTTGGATCAAAGCTTCGCCGCCGATTTCCTCTACTCGCCGCCGACCGGTGACAACAGCAGCGCCATGCAAACCACCGTCGTCCGCACGTCTCAGCTGACAGAGCTCCGGCCGCCGCCTCGGCCTCCGATTCCGCCGCCGAGGAGGACGGAACCGAAGACGCCGAACTTCGCCTACTTCTCGAGGCACAACACGAGAGCCGCTGAGCCGACCTTGAAGACCGCCGGGAGGGAATCCACGGTCGTGGATTCGTGCGAGACGTCGAGAGTTTCGGAGACTGTGAGGAGCGCGGCGGAGAGGACGGAAGGAGGCGCCGGCGCGGCGGCTCCTTCGACGAGTGCAGGCGGAGGAAGGAGCACGATGATGTGCGATGTGACGATGACGTCATCACCGGACGGTTCGAGTAGCAGTGACGAACCGGTTCAGTTGGCGGCGGCGGCGGCGGAGGCGGAGGACCGGAAGCGGAAGGGTCGGGAGGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGTTCGGGGATCAACGTCTGCAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGCGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAACAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTTCATACTTGAAGTCATTGCAGTTACAAGTACAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCGGCTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTTCCCATGCCTCCTTTCCACATGCCGCATGTTCCTGCTCCTGATTCATCTAGAATGCAAGCAGCAAATCAGCCAGATAATAATAATATGGTCACCTCAGCTGGTCCACCTGATCCAAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAACAATATCTTGGTCCCCCCCAGATGCAGTTTCAATTAATTCAGAATCATGCAATGAACCGACCAAATGTTATTAGCAAGCCAAGTACCAGTAAGGGCGCTGAGAATCCAGAAAACCATTAG 1752 0.5268 MVQTVKNPFRPLASHYSEGDILSLWVFVNRGCSLCSKSQRAQHQIQHTTRSSSATKISQHNTTQPPCSTSSNPTVYFDIQMDDDHEYPTLTPTGLPRQKKPSIADDDDIMELLWHNGQVVMHSQNQRSLRKLPPARNSDHVSPAGPSTAREIRPLVEHFNQHLFMQEGEMASWLHYPIDDNDPPLDQSFAADFLYSPPTGDNSSAMQTTVVRTSQLTELRPPPRPPIPPPRRTEPKTPNFAYFSRHNTRAAEPTLKTAGRESTVVDSCETSRVSETVRSAAERTEGGAGAAAPSTSAGGGRSTMMCDVTMTSSPDGSSSSDEPVQLAAAAAEAEDRKRKGREAEEWECQSEDVDFESEAKKQVRGSTSAKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPHVPAPDSSRMQAANQPDNNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPPQMQFQLIQNHAMNRPNVISKPSTSKGAENPENH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02946 583 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983
Pumo5g02946 583 MobiDBLite consensus disorder prediction 497 583 - -
Pumo5g02946 583 MobiDBLite consensus disorder prediction 213 381 - -
Pumo5g02946 583 FunFam Basic helix-loop-helix transcription factor 368 431 - -
Pumo5g02946 583 Pfam Helix-loop-helix DNA-binding domain 377 423 IPR011598 GO:0046983
Pumo5g02946 583 SMART finulus 379 428 IPR011598 GO:0046983
Pumo5g02946 583 CDD bHLH_AtPIF_like 373 436 IPR047265 -
Pumo5g02946 583 MobiDBLite consensus disorder prediction 296 324 - -
Pumo5g02946 583 MobiDBLite consensus disorder prediction 509 583 - -
Pumo5g02946 583 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 439 IPR036638 GO:0046983
Pumo5g02946 583 PANTHER TRANSCRIPTION FACTOR PIF3 97 528 IPR044273 GO:0003700|GO:0006355
Pumo5g02946 583 MobiDBLite consensus disorder prediction 331 346 - -
Pumo5g02946 583 MobiDBLite consensus disorder prediction 45 74 - -
Pumo5g02946 583 MobiDBLite consensus disorder prediction 219 235 - -
Pumo5g02946 583 MobiDBLite consensus disorder prediction 260 277 - -
Pumo5g02946 583 Gene3D - 368 431 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02946 Pumo-Chr5 77061087 77068376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02946 78 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.895 2.51e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02946 HLH 7.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02946 - - gmx:100797225 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02946 5 77061087 77068376 Pumo5g02946 5 77061087 77068376 ECH
Pumo5g02946 5 77061087 77068376 Pumo3g02553 3 38567752 38573858 PCT