Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02944 ATGGTACCTCAAAACTTGGCAACCAAATTAACAGCACTTGTTGTAGATGACAATATACTCAACCGAAAGATTCATCAGAAGCTGTTGGAGAGTGTTGGAGTGAAAAATCAGGGAGTGATAAATGGCAAAGAAGCAGTGGACATTCATTGCCATGGACAAAGATTCGACCTCATTCTCATGGACATGGATATGCCTATCATGAATGGCATTGAGGCAACAAAGGAACTTCGCTCAATGGGGATTGGTAGCATGATTGTTGGTGTGTCATCACGCTGTACGGAAGCAGAAATACGAAAATTTATGGAAGCGGGGCTTAATGACTACCATGAGAAACCCTTGAACACTGCTAAGCTTACTTCCATTCTTGATAAGATCAACCCCAGTTTTACTCGTAATTAG 399 0.416 MVPQNLATKLTALVVDDNILNRKIHQKLLESVGVKNQGVINGKEAVDIHCHGQRFDLILMDMDMPIMNGIEATKELRSMGIGSMIVGVSSRCTEAEIRKFMEAGLNDYHEKPLNTAKLTSILDKINPSFTRN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02944 132 CDD REC_hyHK_CKI1_RcsC-like 13 122 - -
Pumo5g02944 132 Pfam Response regulator receiver domain 13 122 IPR001789 GO:0000160
Pumo5g02944 132 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 126 - -
Pumo5g02944 132 SUPERFAMILY CheY-like 9 125 IPR011006 -
Pumo5g02944 132 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Pumo5g02944 132 Gene3D - 3 129 - -
Pumo5g02944 132 SMART REC_2 10 122 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02944 Pumo-Chr5 77041287 77041876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02944 10 122 Response Regulator Gene Family AT3G04280 47.826 9.15e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo5g02944 Response_reg 3.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02944 - - gmx:100794931 235.343