Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02926 ATGGCAACTCAAGGTCAAGTCATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTAACCATCGAAGACGTTCAGGTGGCTCCGCCTCAGGCCGGCGAGGTCCGAGTCCAAATCATCTACACCGCCCTCTGCCACACCGATGCTTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCCTGTATTCTTGGTCATGAAGCTGCAGGGATTGTGGAGAGTGTTGGAGAAGGTGTTACTAATGTTCAGCCTGGGGATCATGTCATTCCCTGTTACCAGGCTGAGTGTGGGGAGTGCAAGACTTGCAAATCAGGGAAGACTAACCTTTGCGGCAAGGTTCGCGCCGCCACTGGAGTTGGGGTCATGCTCAACGATATGAAGAGTCGGTTCTCGATTAATGGAAAGCCCATTTATCATTTCATGGGAACCTCCACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCCATAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTTCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGTCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCGAAAACTGCTGGTGCATCCCGGGTTATTGGCATAGATATTGACAGCAAGAAGTTTGATATAGCAAAAAACTTTGGAGTCACTGAGTTTATAAATCCAAATGAACATGATAAACCAATTCAGCAGGTCATAATTGATCGCACAGATGGTGGAGTTGATTATAGCTTTGAGTGTATCGGAAATGTCTCCGTGATGAGAGCTGCTTTGGAATGCTGCCACAAGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACCCGTCCCTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAGGTGCCTTGGCTTGTAGACAAGTACTTAAAGAAGGTAAAGGTTTTTCAAAGAGTGTTCTGTTTCTATGCATTAATTCAGCATAAGAATGGGTAG 1083 0.4774 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQIIYTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKTCKSGKTNLCGKVRAATGVGVMLNDMKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVSTGLGAVWNTAKVESGSIVAIFGLGTVGLAVAEGAKTAGASRVIGIDIDSKKFDIAKNFGVTEFINPNEHDKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKVKVFQRVFCFYALIQHKNG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02926 360 FunFam alcohol dehydrogenase 1-like isoform X1 18 181 - -
Pumo5g02926 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 339 IPR036291 -
Pumo5g02926 360 CDD alcohol_DH_class_III 8 344 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pumo5g02926 360 PANTHER ALCOHOL DEHYDROGENASE 5 341 - -
Pumo5g02926 360 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Pumo5g02926 360 Gene3D - 182 320 - -
Pumo5g02926 360 Gene3D - 13 341 - -
Pumo5g02926 360 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Pumo5g02926 360 SUPERFAMILY GroES-like 3 197 IPR011032 -
Pumo5g02926 360 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 340 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pumo5g02926 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Pumo5g02926 360 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02926 Pumo-Chr5 76764896 76768394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02926 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.364 1.84e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02926 K00121 - gmx:100499743 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02926 5 76764896 76768394 Pumo5g02926 5 76764896 76768394 ECH