Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02923 ATGGCTGCTTACACTTGCTCCGCCGCCGACCTCTACCCTCTTCTAGGCGTCGCCGCCAACGCCACCGCCGCGGCCGAATACATCTGCTGTCGTTTTGAGGCCATCTCAAACAAGTTTGTGGACACCACTTACGCCGTTGACACCACTTTCCTTCTCTTCTCCGCATACCTCGTGTTCGCCATGCAACTTGGTTTTGCCATGCTATGCGCCGGTTCCGTACGTGCCAAGAACACCATGAACATCATGCTGACCAATGTCCTCGACGCCGCCACTGGAGGCATCTTCTTCTACGTGTTCGGCTTTGCCTTTGCTTTTGGCACCCCTTCGAACGGTTTCATCGGGAAACACTTCTTCGGCCTCGGCCAGTTTCCGTCGCCGAATTTCGACTACGGTTACTTTCTGTATCAATGGGCTTTCGCCATTGCTGCTGCTGGGATCACGAGTGGTTCCATTGCGGAGAGGACGCAGTTCGTGGCTTATTTGATATACTCTTCGGTTTTGACTGGTTTGGTGTACCCTATTGTGGCGCATTGGTTCTGGTGTTCTGATGGGTGGGGCAGTGCTGCTAGAACGGAGGGTTTGTTGTTCGGGTCTGGGGTTATTGATTTTGCCGGCTCCGGTGTTGTTCATTTGGTTGGTGCAGTTGCTGGGTTATGGGGTGCTTTCATTGAAGGCCCTAGAATTGGGAGGTTTGATCATGCGGGGAAGGCTGTGCCGATGAGAGGACACAGTGGAACGTTGGTGGTTTTGGGGACTTTCTTGTTGTGGTTTGGTTGGTATGGTTTCAACCCTGGCTCGTTTCTCAACATTTTGAAGGCTTATGGAGAGACTGGTTCTTATTATGGGCAGTGGAGTGCTGTTGGGAGGACTGCAGTGACCACAACCCTTGCTGGATGTTCAGCAGCACTGACTACACTCTTTGGGAAGCGCATGCAAACGGGGCATTGGAATGTCACAGATGTTTGCAATGGTTTGCTTGGTGGATTTGCTGCCATCACTGCAGGGTGTTCGGTTGTGGATCCGTGGGCTGCGATCATATGTGGTTTTGTGGCTGCTTGGGTGCTCATTGGGTGCAACTTGCTGGCGGAGAAGTTGAAGTATGATGACCCTCTCGAGGCTGCACAGCTTCATGGTGGGTGTGGCACGTGGGGGATTATCTTCACTGCTTTGTTTGCTAAGAAAGAGTATGTGAATGAGGTGTATCCGGGGCTACCTAATAGGCCTTATGGCCTGTTGATGGGTGGGGGTGGAAAGTTGTTGGCTGCACATGTTGTTCAGATTTTGGCCATCACGGCTTGGGTGAGTGTCACAATGGGAGCAGTGTTCCTTGTGTTGCATAAACTGGATCTACTGAGGACCCCACCTGATGAGGAGATGGAAGGGTTGGATGCAACCAGCCATGGTGGATTGGCATATGAGTTTCACGAAAAGGAAGAAAGGAAACTGGGATTTGGAGCAACTACTGTTTGA 1470 0.5177 MAAYTCSAADLYPLLGVAANATAAAEYICCRFEAISNKFVDTTYAVDTTFLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYVFGFAFAFGTPSNGFIGKHFFGLGQFPSPNFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVAHWFWCSDGWGSAARTEGLLFGSGVIDFAGSGVVHLVGAVAGLWGAFIEGPRIGRFDHAGKAVPMRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGETGSYYGQWSAVGRTAVTTTLAGCSAALTTLFGKRMQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAIICGFVAAWVLIGCNLLAEKLKYDDPLEAAQLHGGCGTWGIIFTALFAKKEYVNEVYPGLPNRPYGLLMGGGGKLLAAHVVQILAITAWVSVTMGAVFLVLHKLDLLRTPPDEEMEGLDATSHGGLAYEFHEKEERKLGFGATTV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02923 489 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pumo5g02923 489 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Pumo5g02923 489 Gene3D Ammonium transporter AmtB like domains 28 485 IPR029020 -
Pumo5g02923 489 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Pumo5g02923 489 SUPERFAMILY Ammonium transporter 44 452 - -
Pumo5g02923 489 FunFam Ammonium transporter 28 485 - -
Pumo5g02923 489 PANTHER AMMONIUM TRANSPORTER 22 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02923 Pumo-Chr5 76689740 76691526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02923 2 481 Inorganic Solute Cotransporters AT4G28700 77.320 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02923 K03320 - cave:132166278 820.461