Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g02915 | ATGCCAGCCCCGGTTGTGTTAGTGTTGATTTGGAAACACGTGACGTTCGGATTGGAAACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTTGGTCTTGGGGTTTGATGGGGTGGCTTTGATTAGAGGAATAAGGGATGTGGATGTGGATTTGGATTTGGGTTTGGCTCTTCTTTCTCTGCCTCTTGTGCAGGGTTTAGCTTGGGTTGTGTTGAGCTTCTCGGCTTTGCATTGCAAGTTCAAGGCGTGTGAGAGGTTTCCAATTTTGCTCAGAGTTTGGTGGTTTGTGTTGTTTGCTATTTGTTTGTGTGGTTTGGGTGTTACTGGTATAAAGGTTTTTAGGAGTTCCGAGGAGCAGCAGCCATTGCTTGTTGAGGAAGAACCGGGGTGTCTCAAGGTTACTCCTTATAGTGATGCTGGACTTTTTAGCTTGACCACTTTGTCTTGGTTGAATCCACTTCTTTCCATTGGGGCAAAAAGGCCACTTGAGCTTAAGGACATTCCCCTTGTTGCACCGAAAGATCGATCCAAGACAAATTATAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCGGAAAACACGTCTGGGCAGCCTTCATTGGCTTTGGCACTTCTCAAGTCGTTCTGGAAGGAGGCGGCTTGTAATGCCATATTTGCTGGTATCACTACTCTTGTCTCGTATGTTGGTCCATACATGATAAGTTACTTTGTTGATTACTTAGTTGGCAAAGAAATTTTCCCACATGAGGGGTATGTCCTTGCAGGGATATTCTTTGTGGCTAAGCTTGTGGAGACCTTGACTACTAGGCAGTGGTATCTAGGGGTGGACATCTTGGGTATGCATGTTAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGGCTAAGGATATCAAGCTTGGCCAAGCAAAGTCACACGAGTGGGGAGGTTGTTAACTACATGGCTATTGATGTTCAGAGGGTTGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATTGCATCTATTGCAACGCTGATTGCTACAATAATTTCCATTGTCGTCACTGTTCCTGTGGCCAGGATCCAAGAAAATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAGGACAGATATAGAGTGAAATTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCGGCAGTCACTTTTGGTACTTCCATATTGTTGGGTGGCCAGCTGACTGCTGGTGGTGTACTTTCTGCTCTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTCCCAGACTTGGTGTCAACAATGGCTCAGACAAAGGTTTCTCTTGACCGGTTATCTGGTTTCCTGCTGGAGGAAGAATTGCAGGAAGATGCAACTATTGTCTTGCCACAAGGCATTACTAACATTGCTATAGAAATTAAGGATGGTGTCTTCTGTTGGGACCCTTCTGAATCTTGTAGGCCTACCCTATCAGGGATAAGTATGAAAGTTGAAAAAGGGATGCGCGTGGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTCAGAGTGTGTGGCTCTGCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGATGCTCACACTGGATCAGACTTGTTTAGGGAGTATATATTGACAGCACTAGCAAATAAAACAGTCATTTATGTGACCCATCAAGTTGAATTTCTTCCCGCTGCTGATTTGATACTGGTTCTTAAAGAAGGCTGCATCATACAAGCAGGAAAGTATGACGATCTTTTACAAGCAGGAACAGATTTTAATACTCTGGTTTCAGCTCACCATGAAGCCATAGAGGCTATGGATATCCCTACTCACTCCTCTGAAGATTCAGATGAAAATTTATCCCTGGAGGCATCTGTTATGACCAGTAAGAAATCCATTTGTTCTGCAAACGATATAGACAGTTTGGCAAAGGAAGTGCAAGAGGGAGCATCTACTTCAGATCAAAAAGCAATTAAGGAGAAGAAGAAAGCAAAGCGATCAAGAAAGAAACAGCTTGTTCAGGAAGAGGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCAGCAGCATATAAAGGCTTATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCTTCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTTTGGTGGCTACATTTGGTCTTGCAGCTGCACAGAAGCTATTTTTGAAAATGCTTAAAAGTGTTTTCCGTGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATCGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTCAGACTTGGTGGGTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACAGAAGTTACATGGCAAGTTTTGCTCTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTTCGTATTGTTAGCATCCAGAAGTCTCCAATTATAAATCTTTTTGGTGAATCAATTGCTGGAGCATCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGCTTTGCACGACCGTTCTTCTGCAGTCTTTCTGCAATTGAGTGGCTCTGCCTGCGGATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGCATGGTATTACTTGTGAGTTTTCCTCGTGGAAGTATCGACCCCAGCATGGCTGGACTTGCTGTGACGTATGGCCTGAATTTAAATGCACGCCTTTCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCCACAATTATTGAAGACTCTCACCCTCCATCCTCATGGCCGGAAAATGGGAACGATTGA | 3462 | 0.4318 | MPAPVVLVLIWKHVTFGLETWFKLSVLSCFYVLLVQVLVLGFDGVALIRGIRDVDVDLDLGLALLSLPLVQGLAWVVLSFSALHCKFKACERFPILLRVWWFVLFAICLCGLGVTGIKVFRSSEEQQPLLVEEEPGCLKVTPYSDAGLFSLTTLSWLNPLLSIGAKRPLELKDIPLVAPKDRSKTNYKVLNSNWERLKAENTSGQPSLALALLKSFWKEAACNAIFAGITTLVSYVGPYMISYFVDYLVGKEIFPHEGYVLAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRISSLAKQSHTSGEVVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTVPVARIQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGITNIAIEIKDGVFCWDPSESCRPTLSGISMKVEKGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGTIEENILFGSPMDKAKGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALANKTVIYVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLQAGTDFNTLVSAHHEAIEAMDIPTHSSEDSDENLSLEASVMTSKKSICSANDIDSLAKEVQEGASTSDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLKSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIINLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSHPPSSWPENGND | 1153 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g02915 | 1153 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 143 | 1152 | - | - | |
Pumo5g02915 | 1153 | Gene3D | - | 517 | 627 | IPR027417 | - | |
Pumo5g02915 | 1153 | Gene3D | - | 628 | 752 | IPR027417 | - | |
Pumo5g02915 | 1153 | Pfam | ABC transporter transmembrane region | 836 | 1078 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g02915 | 1153 | Pfam | ABC transporter transmembrane region | 225 | 489 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g02915 | 1153 | Gene3D | ABC transporter type 1, transmembrane domain | 795 | 1134 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g02915 | 1153 | Gene3D | ABC transporter type 1, transmembrane domain | 194 | 516 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g02915 | 1153 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 836 | 1106 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g02915 | 1153 | ProSitePatterns | ABC transporters family signature. | 633 | 647 | IPR017871 | GO:0005524|GO:0016887 | |
Pumo5g02915 | 1153 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 535 | 731 | IPR003439 | GO:0005524 | |
Pumo5g02915 | 1153 | Pfam | ABC transporter | 554 | 600 | IPR003439 | GO:0005524 | |
Pumo5g02915 | 1153 | FunFam | ABC transporter C family member 10 | 204 | 517 | - | - | |
Pumo5g02915 | 1153 | SUPERFAMILY | ABC transporter transmembrane region | 833 | 1133 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g02915 | 1153 | Coils | Coil | 382 | 402 | - | - | |
Pumo5g02915 | 1153 | CDD | ABC_6TM_ABCC_D2 | 834 | 1128 | IPR044726 | GO:0140359 | |
Pumo5g02915 | 1153 | SMART | AAA_5 | 563 | 716 | IPR003593 | GO:0016887 | |
Pumo5g02915 | 1153 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 224 | 501 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g02915 | 1153 | FunFam | ABC transporter C family member 5 | 797 | 1134 | - | - | |
Pumo5g02915 | 1153 | CDD | ABCC_MRP_domain1 | 535 | 707 | - | - | |
Pumo5g02915 | 1153 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 531 | 730 | IPR027417 | - | |
Pumo5g02915 | 1153 | Coils | Coil | 791 | 811 | - | - | |
Pumo5g02915 | 1153 | Pfam | ABC transporter | 629 | 660 | IPR003439 | GO:0005524 | |
Pumo5g02915 | 1153 | SUPERFAMILY | ABC transporter transmembrane region | 210 | 515 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g02915 | 1153 | CDD | ABC_6TM_ABCC_D1 | 222 | 509 | IPR044746 | GO:0140359 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g02915 | Pumo-Chr5 | 76449624 | 76454856 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g02915 | 535 | 724 | Calmodulin-binding Proteins | AT2G36910 | 28.448 | 3.39e-14 | 75.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g02915 | - | - | gmx:100814850 | 2035 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo5g02915 | 5 | 76449624 | 76454856 | Pumo3g02501 | 3 | 37826659 | 37828422 | PCT |