Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02908 ATGTTTGATGAATCAACTACAGTTCTCACTCACAAAGGATCAAATGGAGAAGATCATGGTACTACAGTTGGAGCAGACGGGCATTCAAAATTGCTGGATGGTTCTTCCAACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTTCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGCTAATGGACTTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAAATGCAAGCTCATATAG 285 0.4211 MFDESTTVLTHKGSNGEDHGTTVGADGHSKLLDGSSNFVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTPEANGLAPRLEEKNRRSKCKLI 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02908 94 Gene3D - 1 84 - -
Pumo5g02908 94 Coils Coil 92 94 - -
Pumo5g02908 94 ProSiteProfiles PB1 domain profile. 1 74 IPR000270 GO:0005515
Pumo5g02908 94 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 76 IPR003311 GO:0005634|GO:0006355
Pumo5g02908 94 MobiDBLite consensus disorder prediction 1 17 - -
Pumo5g02908 94 MobiDBLite consensus disorder prediction 1 28 - -
Pumo5g02908 94 SUPERFAMILY CAD & PB1 domains 33 70 - -
Pumo5g02908 94 Pfam AUX/IAA family 1 81 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02908 Pumo-Chr5 76380176 76382368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02908 26 81 B3 DNA Binding Superfamily AT1G59750 35.714 3.94e-06 41.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo5g02908 AUX_IAA 4e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02908 K14484 - gmx:100789143 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02908 5 76380176 76382368 Pumo5g02908 5 76380176 76382368 ECH
Pumo5g02908 5 76380176 76382368 Pumo3g02495 3 37782610 37787307 PCT