Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02901 ATGATAAAAACTGGGCACTCATTGAAGAAGAGAGTTATAGGGCTCTGGCTGATGCAATATTTGAGGAGGAAGAAAATAAGGTTAATGAGCCAGACCAGAATAACAAAAACAAGAAGGACGGAGTGGATGATGAAGAAGCTCATACGCACGAGGAGGCCCGTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTCGCGCCCTCTGAATAGCAGTGGCCCCAGCTCAGCTGTATTTCCATTGAAAACGCCTAAGTTAGAAGATGGCACAGTGCCTGAGAGCAGTTCCAGACTGCAGCCTCAAAGCACGGCAACATTATCTGATGGAAATGCAAGGATTGATGCTCGTCATGTTCCCCCACAAGATGCTGTTCTCAACAAGGGAAAGCAACCTATATCACCTCAAATTACTCCCAGGGGGAGAAGGTCCCTTGCAGAACCACTTAAAGAGCCAACAGTTGAACCAGGAGCTGCTCCGTTGGCAAATAACAAAATGCCTCATCCATTTATTTTGATCAAGCCCAAGGATGAGCCTGTTGATGATATGCCAGATTATGAGATTCCCCTTGCAGTGATTCCTCCTGAACCATCAAGTGGAGGAGAGGGTGCAGTTGGAAAGCAAGATGGCCATGACACTGTGGTATCACAAAGCAGAGATGAAGACGTTGAACGTGAAGATGTTCTTCCTTCCTCAAATGAAGAAGCAACTTCTAATGTAGATGTAGCATTGTCATCTATGGGAGAGGAACAATCTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCCGAGACCAATGGTTCACCAATTGTCAGAGGAAATAAAGATTCAGTCTTTGCAAATGGATCAATCAGTGTTAAGTCTTCTTCTGCCATGGCTGAACCTCAAGTTCCTAGTTCTCTACCCTGGCCGAGTGATCTGGATGATGCTGTACTAGCTCCCAAGAAGGTTGGAATGAATGGTTTCTTACAAAGTGATGGTGGGAAGGAGCTGGAGGATCCTATATCCCCAAATTCACGCACTTTAGTGATTGTTCCAAAACATCAGCTTACAACTGATGATGTAAGGGCTGTTCATGATGTTAATGACCTAACGAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTGAGTAACACTACTAATGATTTCCCACCAGCCTTTCACTACATACCCCGAAACCTTGTGTTCCGAGATGCTTATGTTAATATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGTTCAACTTGTATGGGCAATTGTATATTGTCAGCTAAACCCTGTTCTTGTACAAATAAGACTGGGGGTGAATTTGCTTACACTGCACAAGGCCTACTAAAGGAAGAGTTCTTGGACGAGTGTATTTCCATCAGCCGTGATCCTCAAAATTATTTCTATTGCAAAGCCTGTCCTCTTGAAAGATCAAAGATTGATGATTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAGTGCTGGTGCAAATGCGGCTGTGGGAAACATTGTGGCAATCGGGTTGTCCAGCGTGGAATAACTTGCAAGTTGCAGGTGTTTTTGACTTCAGACGGAAAAGGTTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCGCATTTGTATGTGAGTTTGTTGGGGAAATTTTAACCGTCAAAGAGTTGCACGAGAGGAACATGAAATATCCCAAAAATGGGAAATATACATACCCAATTTTATTGGATGCAGATTGGGGTTCAGGAGTTGTGAAGGATAGAGAAGCTCTTTGCTTATATGCAGCATCGTATGGAAATGCTGCTAGATTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGAAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGATGATCAGCCTGTAGAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGTAGGAATATTAAGCGAACAAATAGTAAGTTCAATCTTCCATTTATGTGTAATTTGCATAAATTTGTTTTACTTTCAACATAA 2115 0.4246 MIKTGHSLKKRVIGLWLMQYLRRKKIRLMSQTRITKTRRTEWMMKKLIRTRRPVRPLKRLRLRGQEGQSSRPLNSSGPSSAVFPLKTPKLEDGTVPESSSRLQPQSTATLSDGNARIDARHVPPQDAVLNKGKQPISPQITPRGRRSLAEPLKEPTVEPGAAPLANNKMPHPFILIKPKDEPVDDMPDYEIPLAVIPPEPSSGGEGAVGKQDGHDTVVSQSRDEDVEREDVLPSSNEEATSNVDVALSSMGEEQSVKITQTDDVSKESETNGSPIVRGNKDSVFANGSISVKSSSAMAEPQVPSSLPWPSDLDDAVLAPKKVGMNGFLQSDGGKELEDPISPNSRTLVIVPKHQLTTDDVRAVHDVNDLTKGEERVKISWVSNTTNDFPPAFHYIPRNLVFRDAYVNISLSRIGNEDCCSTCMGNCILSAKPCSCTNKTGGEFAYTAQGLLKEEFLDECISISRDPQNYFYCKACPLERSKIDDCLEPCKGHLKRKFIKECWCKCGCGKHCGNRVVQRGITCKLQVFLTSDGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERNMKYPKNGKYTYPILLDADWGSGVVKDREALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAQEELTWDYGINFDDHDDQPVELFQCRCGSKFCRNIKRTNSKFNLPFMCNLHKFVLLST 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02901 704 Pfam Pre-SET motif 370 514 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g02901 704 MobiDBLite consensus disorder prediction 67 82 - -
Pumo5g02901 704 MobiDBLite consensus disorder prediction 265 281 - -
Pumo5g02901 704 MobiDBLite consensus disorder prediction 216 234 - -
Pumo5g02901 704 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 24 698 IPR025776 -
Pumo5g02901 704 Gene3D SET domain 350 664 IPR046341 -
Pumo5g02901 704 SUPERFAMILY SET domain 361 661 IPR046341 -
Pumo5g02901 704 ProSiteProfiles SET domain profile. 522 655 IPR001214 GO:0005515
Pumo5g02901 704 MobiDBLite consensus disorder prediction 235 258 - -
Pumo5g02901 704 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 38 686 - -
Pumo5g02901 704 MobiDBLite consensus disorder prediction 93 113 - -
Pumo5g02901 704 MobiDBLite consensus disorder prediction 49 165 - -
Pumo5g02901 704 Pfam SET domain 534 655 IPR001214 GO:0005515
Pumo5g02901 704 MobiDBLite consensus disorder prediction 197 281 - -
Pumo5g02901 704 CDD SET_SETDB-like 390 655 - -
Pumo5g02901 704 SMART preset_2 366 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g02901 704 ProSiteProfiles Pre-SET domain profile. 422 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g02901 704 SMART set_7 522 661 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02901 Pumo-Chr5 76304628 76311377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02901 368 679 Su(var)3-9 homologs AT1G73100 30.488 1.90e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo5g02901 Pre-SET 4.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02901 - - gmx:100809678 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02901 5 76304628 76311377 Pumo5g02901 5 76304628 76311377 ECH
Pumo3g02491 3 37738613 37745590 Pumo5g02901 5 76304628 76311377 PCT