Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02897 ATGGAAGCACGTCCTGCTTTCTCTATTGAAAGATCAAATGCTAAGCAACTCAACAACATGGGGATGTCAGAAGCTTTACCTTCATCGTTGCCTGTCCTTCCATCGCCTTTAGAAGAGACATACCCCAAATCATCTGATTCTCAGCAAGCTTTTATGCAAAAAGAGCTTAAAACAAATCCTTTTACTCATTCAAGTCATTTAACTTCCAGTGGAGCTGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAACAGCCTAGAAATACTCATTTTATTTCACAGTCATTGAGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAGTGAACCAATACCTTCTACAACATCAACCCCTTATTCCAATGGAAACAGTGTTTCTTGGCAAACAGATTCCCTGCCTAGCTTTCTCGATTTCCCTGCCAATACCTCCATTGATAATAGTCAAGTAGAAAGCAGTGCCTGCAATATTATGGCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAAGAGTGGGCTGACCAGTTAATCAGTGATGATGATCCTTTGACTTCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCAAAGGTCTCAAAATCATCTTCACAGCTTCCAATAGGATACCAATCCCAGAGCCATCAACAACTTCCTGCTTCATCTGGAGAAAACCGTGTTGGTGTTGCCCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTATCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCTGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGTCCAATTGAAGAGATGTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCATCTGCCGTTGAGAGTGCATCTGGAGTGTCTTCTGATGCCGTGAAAGATTCTCCAGCCAAAACTGAATTAGAAACTGTCAAAGTGGACCATTGCAAGTCAGGACTTGATCAAGCTAATGGCAGTACTACAGTTGAGGAAAGGTCATCGGAAGTGGGTGAGAAGCAGGATGCTCCTGAAAGTCAAGCTTCTGAGAATCCTGAGCAACATGCTAGTGAAGATAATGCTAAAGCCTCAAAGCGTCCAAGGACAGAGGAGTAA 1455 0.4206 MEARPAFSIERSNAKQLNNMGMSEALPSSLPVLPSPLEETYPKSSDSQQAFMQKELKTNPFTHSSHLTSSGAVGHMFSSSPGYSTDLHHSSFSSHEKQPRNTHFISQSLSNMASLPLSYSSNSEPIPSTTSTPYSNGNSVSWQTDSLPSFLDFPANTSIDNSQVESSACNIMATEEYSKRNDWQEWADQLISDDDPLTSNWNDLLADNIQDLEPKVSKSSSQLPIGYQSQSHQQLPASSGENRVGVAPSSSANSAPAKPRMRWTPELHEAFVEAINQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAVESASGVSSDAVKDSPAKTELETVKVDHCKSGLDQANGSTTVEERSSEVGEKQDAPESQASENPEQHASEDNAKASKRPRTEE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02897 484 Pfam MYB-CC type transfactor, LHEQLE motif 343 390 IPR025756 -
Pumo5g02897 484 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Pumo5g02897 484 MobiDBLite consensus disorder prediction 468 484 - -
Pumo5g02897 484 MobiDBLite consensus disorder prediction 215 257 - -
Pumo5g02897 484 Coils Coil 346 366 - -
Pumo5g02897 484 MobiDBLite consensus disorder prediction 416 430 - -
Pumo5g02897 484 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 229 477 IPR044848 GO:0003700
Pumo5g02897 484 MobiDBLite consensus disorder prediction 120 139 - -
Pumo5g02897 484 MobiDBLite consensus disorder prediction 215 260 - -
Pumo5g02897 484 MobiDBLite consensus disorder prediction 11 25 - -
Pumo5g02897 484 NCBIfam myb-like DNA-binding domain, SHAQKYF class 258 312 IPR006447 GO:0003677
Pumo5g02897 484 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Pumo5g02897 484 MobiDBLite consensus disorder prediction 1 48 - -
Pumo5g02897 484 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Pumo5g02897 484 Gene3D - 257 316 - -
Pumo5g02897 484 MobiDBLite consensus disorder prediction 403 484 - -
Pumo5g02897 484 FunFam Myb family transcription factor 257 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02897 Pumo-Chr5 76261803 76268507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02897 1 432 G2-like Transcription Factor Family AT4G28610 50.113 3.84e-116 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g02897 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02897 - - gmx:100810560 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02897 5 76261803 76268507 Pumo5g02897 5 76261803 76268507 ECH
Pumo5g02897 5 76261803 76268507 Pumo3g02484 3 37695539 37700087 ECH
Pumo5g02897 5 76261803 76268507 Pumo3g02484 3 37695539 37700087 PCT