Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02896 ATGACAACTGTTCAAAAGGTTCGTGCTCTTCTCTTTCATATACTCTTCATGATATCTTTGCTTCCATTGAAAATCACTTCATCACCAACAACAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTCTGTCCCCTCCTCTTCCTCCCTCTCTAAACTCATCATGGTCCCTCACCAACCTTGGCAACCTTTGCAATTGGGATGCCATTGGTTGTTACAACACTAACACAACAGTCTCACAGATAAACTTGTCTGATGCCAATCTCACCGGCACTCTCACTGCCTTGGATTTTGCTTCCCTCCCTAACCTCGCCCAACTCAACCTCAATGACAACAATTTTGGTGGGTCAATCCCATCAGCAATTGGCAACCTCTCCAAGCTCACTTTATTGGACTTGGGTAACAACTTATTTGAAGGCACACTGCCTTATGAGCTAGGCCAGCTAAGGGAGCTTCAATATCTTAGCTTTTACAACAACAATCTCAATGGCACCATTCCTCATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAACTACTTTATAACTCCTCCTGACTGGTCCCAATATTCAGGTATGCCTTCCTTAACTCGCCTTGGTTTACATCTCAATCCATTACTCACTGGCGAATTCCCAAGTTTCATACTGGAGTGCCATAACTTGACATACCTTGACATCTCTCAGAATCAATGGAATGGCACAATACCAGAATCCATGTATAGCAATTTGGCCAAGCTAGAATACCTCAACCTCACCAACACGTGGCTAGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTTCTGTTCCCACCGAGATAGGATTGATATCTGGGCTTCAATTTCTTGAATTGATTAACATTTCTGCCCATGGTAAAATTCCTTCTTCCTTAGGCCAACTCAGGGAGCTATGGCACCTTGATCTCAGTAAGAATTTTTTTAACTATACAATCCCTTCTGAGCTTGGGCTATGCACAAATCTATCCTACCTGAGTTTAGCAGAGAATAATTTGACTGGTCCTTTGCCTGTGTCACTAGCTAATCTGGCTAAAATATCAGAATTGGGATTATCAGATAATTCCTTTTCTGGTCAACTTTCTGCTTCACTCATCTCTAATTGGACCCAGTTGATCTCCGTGCAAGTCCAAAACAATAAATTTACAGGAAGGATTCCTCCACAGATTGGCCTGTTGGGAAAAATTAACATCCTCTATCTGTACAACAATCTGTTCTCTGGTCCAATTCCTGCAGAGATTGGAAACCTGAAGGAAATGACACAATTAGACCTTTCACAAAACGGATTCTCTGGTCCAATTCCATCAACACTTTGGAATCTGACAAACCTTCAAGTCATGAATCTTTTCTTCAATCAGTTCTCTGGAACCATTCCCATGGATATTGGAAACCTAACCTCACTGCAAATCTTTGATGTCAACACCAATAACTTGAATGGGGAGTTGCCAGAAACCATTGCCCAATTACCTGCTTTAACCTATTTTTCTGTGTTCACCAATAAATTCTCTGGCAGCATCCCCAGAGAATTTGGAAAGAATAATCCTTTGACTCATGTCTACCTTTCAAACAACAGCTTCTCTGGACAACTGCCTCCTGACTTGTGCAGTGATGGCAATCTAATTACTTTGGCAGTCAATAACAACAGCTTTTCTGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCACTAACTAGAGTTCGGCTTGATGATAATCAGTTCACTGGAAACATCACAGACGCATTTGGGGTACTCCCAAATCTTGATTTTATTTCACTTAGTAGAAATCAGCTGGTTGGTGAGCTCTCCCCGGAGTGGGGTGAATGTGTCAACTTAACTCGGATGGATATGGAAAACAACAAACTTTCTGGAAAAATTCCATCTGAGCTAAGTAAGTTGAGTCAATTAAGGTATCTAAGCCTTCATTCCAATGATTTCACTGGCAATATCCCACCTGAAATTGGAAATTTAAGCCTGCTTTTCATGTTCAACTTGAGCAATAACCATTTATCAGGAGAAATCCCAACGAGTTATGGCAGATTGGCTCAGCTAAATTATCTAGATTTATCAAACAACAACATCAGTGGAAGCATTCCTAAAGAGCTCAGTGGTTGTGATCGCTTACTGAGTCTGAATTTAAGCCATAACAATCTATCTGGGGAGATACCATATGAACTTGGCAATCTGTTCTCACTCCAAATCATGTTGGACCTCAGCAGCAACTCTCTTTCTGGAGCTCTTCCGCAGAACCTTGGAAAGTTAGCATCATTGGAGATTCTCAATGTCTCACACAACCATCTATCAGGGCCAATCCCACCATCATTTTCAAGCATGATCAGTCTTCAATCTATTGATTTTTCTCACAACAACTTGAGTGGTTTGATCCCCACAGGTGGTATTTTCCAGACAGCAACTGGTGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGCCCCAAAGTATTTTCCCCACACAAATCCGGAGGGGTTAACAAAAAAGTTCTTATTGGTGTTATCATACCAGTTTGTGTCGTATTTATTGGGATGATTGGTGTTGGAATCCTACTGTGCCAGCGGCATGCCAAAAAGCACCTTGATGAAGAGTCCAAAAGAATTGAAAAAAGTGATCAGTCTATTAGCATGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGACTTCGATGACAAGTACTGCATAGGAAAGGGAGGATTTGGAAGTGTCTATAGAGCACAATTACTTACAGGTCAAGTTGTTGCTGTTAAAAGGCTCAACATATTAGACTCTGATGACATTCCAGCAGTGAACCGCCAGAGCTTTCAGAATGAGATAAGATCACTTACAGGAGTGAGGCACCGTAATATAATAAAGCTTTATGGGTTCTGTTCTAGGAGGGAACAAATGTTCTTGGTTTATGAACATGTAGACAGAGGAAGCTTGGGGAAAGTATTGTATGGAGAGGAAGGAAAATTGGAGCTAAGTTGGGCTGCAAGGCTGAAAATTGTGCAGGGAATAGCACATGCAATTTCATACCTGCACACTGACTGCTCCCCACCCATTGTGCACCGGGATGTAACGTTGAATAACATACTGCTAGACTCAAACTTAGAACCTCGTCTTGCAGATTTTGGCACCGCAAAGCTGCTAAGCTCCAACACTTCAACATGGACCTCAGTTGCTGGTTCCTATGGCTACATGGCTCCTGAACTAGCACAAACTATGAGAGTCACCGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATATTGATGGGAAAGCATCCTGGAGAACTCTTGACTACACTGTCTTCAAACAAGTCTTTGTCATCAATGGAGGAACCACAGATGCTACTGAAGGATGTGCTTGATCAACGGCTTCCACCTCCAACAGGCCAATTAGCAGAAGTAGTAGTGTTCACAATGACCATAGCATTGGCATGCACACGTGCGGCTCCAGAGTCCAGACCCATGATGCGTGCTGTGGCACAAGAACTATCGGCTACTACACAGGCTTGTCTTGCCGAGCCATTTGGCATGATAACCATGAGCAAGCTTACAGGGTTCCAGAAATAG 3690 0.4244 MTTVQKVRALLFHILFMISLLPLKITSSPTTEAEALVKWKNSLSPPLPPSLNSSWSLTNLGNLCNWDAIGCYNTNTTVSQINLSDANLTGTLTALDFASLPNLAQLNLNDNNFGGSIPSAIGNLSKLTLLDLGNNLFEGTLPYELGQLRELQYLSFYNNNLNGTIPHQLMNLPKVWYMDLGSNYFITPPDWSQYSGMPSLTRLGLHLNPLLTGEFPSFILECHNLTYLDISQNQWNGTIPESMYSNLAKLEYLNLTNTWLEGKLSPNLSMLSNLKELRIGNNMFNGSVPTEIGLISGLQFLELINISAHGKIPSSLGQLRELWHLDLSKNFFNYTIPSELGLCTNLSYLSLAENNLTGPLPVSLANLAKISELGLSDNSFSGQLSASLISNWTQLISVQVQNNKFTGRIPPQIGLLGKINILYLYNNLFSGPIPAEIGNLKEMTQLDLSQNGFSGPIPSTLWNLTNLQVMNLFFNQFSGTIPMDIGNLTSLQIFDVNTNNLNGELPETIAQLPALTYFSVFTNKFSGSIPREFGKNNPLTHVYLSNNSFSGQLPPDLCSDGNLITLAVNNNSFSGPLPKSLRNCSSLTRVRLDDNQFTGNITDAFGVLPNLDFISLSRNQLVGELSPEWGECVNLTRMDMENNKLSGKIPSELSKLSQLRYLSLHSNDFTGNIPPEIGNLSLLFMFNLSNNHLSGEIPTSYGRLAQLNYLDLSNNNISGSIPKELSGCDRLLSLNLSHNNLSGEIPYELGNLFSLQIMLDLSSNSLSGALPQNLGKLASLEILNVSHNHLSGPIPPSFSSMISLQSIDFSHNNLSGLIPTGGIFQTATGEAYVGNSGLCGEVKGLTCPKVFSPHKSGGVNKKVLIGVIIPVCVVFIGMIGVGILLCQRHAKKHLDEESKRIEKSDQSISMVWGRDGKFTFSDLVKATDDFDDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNILDSDDIPAVNRQSFQNEIRSLTGVRHRNIIKLYGFCSRREQMFLVYEHVDRGSLGKVLYGEEGKLELSWAARLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSNLEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEILMGKHPGELLTTLSSNKSLSSMEEPQMLLKDVLDQRLPPPTGQLAEVVVFTMTIALACTRAAPESRPMMRAVAQELSATTQACLAEPFGMITMSKLTGFQK 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02896 1229 FunFam MDIS1-interacting receptor like kinase 2 29 191 - -
Pumo5g02896 1229 FunFam Inactive leucine-rich repeat receptor-like protein kinase 436 531 - -
Pumo5g02896 1229 Gene3D Transferase(Phosphotransferase) domain 1 1011 1214 - -
Pumo5g02896 1229 SUPERFAMILY L domain-like 602 840 - -
Pumo5g02896 1229 Gene3D Ribonuclease Inhibitor 535 849 IPR032675 -
Pumo5g02896 1229 SUPERFAMILY Protein kinase-like (PK-like) 908 1204 IPR011009 -
Pumo5g02896 1229 PRINTS Leucine-rich repeat signature 707 720 - -
Pumo5g02896 1229 PRINTS Leucine-rich repeat signature 777 790 - -
Pumo5g02896 1229 FunFam MDIS1-interacting receptor like kinase 2 1011 1210 - -
Pumo5g02896 1229 FunFam Leucine-rich repeat receptor protein kinase MSP1 893 1010 - -
Pumo5g02896 1229 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Pumo5g02896 1229 Pfam Leucine rich repeat 686 741 IPR001611 GO:0005515
Pumo5g02896 1229 Gene3D Phosphorylase Kinase; domain 1 890 1010 - -
Pumo5g02896 1229 FunFam MDIS1-interacting receptor like kinase 2 195 390 - -
Pumo5g02896 1229 CDD STKc_IRAK 936 1204 - -
Pumo5g02896 1229 SUPERFAMILY RNI-like 81 406 - -
Pumo5g02896 1229 ProSiteProfiles Leucine-rich repeat profile. 706 729 IPR001611 GO:0005515
Pumo5g02896 1229 ProSiteProfiles Protein kinase domain profile. 930 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02896 1229 Pfam Protein kinase domain 933 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02896 1229 Pfam Leucine Rich Repeat 779 800 IPR001611 GO:0005515
Pumo5g02896 1229 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Pumo5g02896 1229 Gene3D Ribonuclease Inhibitor 291 389 IPR032675 -
Pumo5g02896 1229 Gene3D Ribonuclease Inhibitor 191 290 IPR032675 -
Pumo5g02896 1229 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1056 1068 IPR008266 GO:0004672|GO:0006468
Pumo5g02896 1229 PANTHER LEUCINE RICH REPEAT KINASE 2 485 1208 - -
Pumo5g02896 1229 SUPERFAMILY RNI-like 312 646 - -
Pumo5g02896 1229 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 536 850 - -
Pumo5g02896 1229 Gene3D Ribonuclease Inhibitor 390 509 IPR032675 -
Pumo5g02896 1229 SMART LRR_typ_2 148 172 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 656 680 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 488 512 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 777 800 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 704 728 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 319 343 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 271 295 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 100 124 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 608 632 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 801 826 IPR003591 -
Pumo5g02896 1229 SMART LRR_typ_2 440 464 IPR003591 -
Pumo5g02896 1229 ProSitePatterns Protein kinases ATP-binding region signature. 936 958 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02896 Pumo-Chr5 76249121 76253056 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02896 1 650 Receptor kinase-like Gene Family AT4G08850 31.490 2.64e-81 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo5g02896 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02896 - - gmx:100809137 2126.67