Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02893 ATGCTAGACATGGCAACTTTTCAAAAGGTTCAGGCTATACTCTTTCATATACTCTTCTTCATATCTCTGCTTCCATTGAAAATCACTTCATCACCAGCATCAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTCTAACCCCTCCTCTTCCTTCCTCTCTAACCTCATGGTCCCTCACCAACCTTGGCAACCTTTGCAATTGGGATGCCATTGTTTGTGACAACACTAACACAACAGTGTCACAGATAAACTTGTCTGATGCCAATCTCACTGGGACTCTCACTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGGAAACTATTTTGGGGGGTCAATACCATCAGCAATTGGTAACCTCTCCAAGCTCACTTTATTGGACTTGGGTAACAACTTATTTGAAGGCACACTGCCTTATCAGCTAGGCCAGCTAAGGGAGCTTCAATTTCTTAGCTTTTACAACAACAATCTCAATGGCACCATTCCTCATCAGCTCATGAATCTCCCTAAGGCATGGTACATGGACCTTGGATCAAACTACTTTATAACTCCTCCTGACTGGTCCCAATATTCAGGTATGCCTTCCTTAACTCACCTTGCTTTGGATCTCAATCCATTTACTGGCGAATTCCCAAGTTTCATACTGGAGTGCCAGAACTTGACTTACCTTGACATCTCTCAGAATCACTGGAATGGCACAATACCAGAATCCATGTATAGCAATTTGGCTAAGCTTGAATACCTCAACCTCACCAATTCTGGGCTAGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTTCTGTTCCCACAGAGATAGGATTGATATCTGGACTTCAAATTCTTGAATTGAATAACATTTCTGCTCATGGGAAAATTCCTTCTTCCTTAGGCCAACTCAGGGAGCTACGGCATCTTGATCTCAGTTTAAATTTTTTTAACTCTACCATCCCTTCTGAGCTTGGCCTATGCACAGATCTATCCCTTTTGAGTTTAGCAGCGAATGGTTTGTCTGGTCCTTTGCCTTTGTCATTAGCTAATCTGGCTAAAATATCAGAATTGGGATTATCAGATAATTCCTTTTCTGGTCAACTTTCTGCTTCACTCATCTCTAATTGGACCCAGTTGATCTCCCTGCAAGTCCAAAACAATAAATTTACAGGAAGGATTCCTCCTCAGATTGGCCTGTTGAAAAAAATTAACATCCTCTATCTGTACAATAATCTGTTCTCTGGTCCCATTCCTGCAGAGATTGGAAACCTGAAGGAAATGACACAGTTAGACCTTTCACAAAATGGATTCTCTGGTCCAATTCCATCAACACTTTGGAATCTGACAAACCTTCAAGTCATGAATCTTTTCTTCAATCAGTTCTCTGGAACCATTCCCATGGATATTGGAAACTTGACCTCACTGCAAATCTTTGATGTCAACACCAATAACTTGAATGGGGAGTTGCCAGAAACAATTGCTCAACTACCTGCTTTAAGCTATTTTTCTGTGTTCACCAATAAATTCACTGGCAGCATTCCCAGAGAATTTGGAAAGAATAATCCTTTGACTCATGTCTACCTTTCCAACAACAGCTTCTCTGGAGAACTGCCTCCTGACTTGTGCAGTGATGGCAATCTAGTTATTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCACTAACTAGAGTTCGGCTTGATGATAATCAGTTCACTGGAAACATCACAAACGCATTTGGGGTACTCCCAAATCTTAATTTTATTTCACTTAGTAGAAATCAGCTGGTTGGTGAGCTCTCCCCGGAGTGGGGTGAATGTGTCAACTTGACTCGGATGGATATGGAAAGCAACAAACTTTCTGGAAAAATTCCATCTGAGCTAAGTAAGTTGAGTAAATTAAGGTATCTAAGCCTGCACTGCAATGAATTCACTGGCAATATCCCACCTGAAATTGGGAATTTAGGCCTGCTTTTCATGTTCAACTTGAGTAGTAACCATTTATCAGGAGAAATCCCAAAGAGTTATGGCAGATTGGCTCAGCTAAATTTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCGAAAGAGCTCGGTGATTGTGATCGCTTACTGAGTCTGAATTTAAGCCAAAACAATCTATCTGGGGAGATACCGTATGAGCTTGGCAATCTGTTCTTTCTCCAAATCTTGTTGGACCTCAGCAGCAACTCTCTTTCTGGAGCTATTCCCCCAAACCTTGGAAAGTTAGCAGCATTGGAGATTCTCAATGTCTCACACAACCATCTATCAGGGACAATCCCACAATCACTTTCAAGCATGATCAGCCTTCAATCTATTGATTTTTCTTACAACTACTTGAGTGGTTCAATCCCCACAGGTCGTGTTTTCCAGACAGCAACTGCTGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAAGTAAAAGGATTAACTTGCCCCAATGTATTTTCCCCACACAAATCCGGAGGGGTTAACAAAAAAGTTCTTCTTGGTGTTATGATACCAGTTTGTGTCTTATTTATTGGGATGATTGGTGTTGGAATCCTACTTTGCCGGCGGCATGCCAAAAAACATCTTGATGAAGAGTCCAAAAGCATTGAAAAAAGTGATGAGTCTATTAGCATGGTGTGGGGAAGAGATGTAAAATTCACATTTTCTGATCTTGTTAAGGCCACGGATGACTTCAATGACAAGTACTGCATTGGAAAGGGAGGATTTGGAAGTGTCTATAGAGCACAATTACTCACAGGCGAAGTTGTTGCTGTTAAAAGGTTCAATATATCAGACTCTGATAACATTCCAGCAGTGAACCGCCAGAGCTTTGAGAATGAGATAAAATCACTTATAGGAGTGAGGTACCGCAATATGATAAAGCTTTATGGGTTCTGTTGTTGGAGGGGTCAAATGTTCTTGGTTTATGAACATGTAGACAGAGGAAGTTTGGCGAAAGTATTGTATGGAGAGGAAGGAAAATTGGAGCTAAGTTGGGCTGCCAGGCTGAAAATTGTGCAGGGAATAGCACATGCAATTTCATACCTGCACACTGACTGCTCCCCACCCATCGTGCATCGGGATGTAACTCTGAATAACATTCTACTAGACTCAGACTTAGAACCTCGCCTTGCAGATTTTGGCACAGCGAAGCTGCTAAGCTCCAACACTTCAACATGGACCTCGGTTGTTGGATCCTATGGCTATATGGCTCCAGGTACATGA 3324 0.4167 MLDMATFQKVQAILFHILFFISLLPLKITSSPASEAEALVKWKNSLTPPLPSSLTSWSLTNLGNLCNWDAIVCDNTNTTVSQINLSDANLTGTLTALDFASLPNLTQLNLNGNYFGGSIPSAIGNLSKLTLLDLGNNLFEGTLPYQLGQLRELQFLSFYNNNLNGTIPHQLMNLPKAWYMDLGSNYFITPPDWSQYSGMPSLTHLALDLNPFTGEFPSFILECQNLTYLDISQNHWNGTIPESMYSNLAKLEYLNLTNSGLEGKLSPNLSMLSNLKELRIGNNMFNGSVPTEIGLISGLQILELNNISAHGKIPSSLGQLRELRHLDLSLNFFNSTIPSELGLCTDLSLLSLAANGLSGPLPLSLANLAKISELGLSDNSFSGQLSASLISNWTQLISLQVQNNKFTGRIPPQIGLLKKINILYLYNNLFSGPIPAEIGNLKEMTQLDLSQNGFSGPIPSTLWNLTNLQVMNLFFNQFSGTIPMDIGNLTSLQIFDVNTNNLNGELPETIAQLPALSYFSVFTNKFTGSIPREFGKNNPLTHVYLSNNSFSGELPPDLCSDGNLVILAVNNNSFSGPLPKSLRNCSSLTRVRLDDNQFTGNITNAFGVLPNLNFISLSRNQLVGELSPEWGECVNLTRMDMESNKLSGKIPSELSKLSKLRYLSLHCNEFTGNIPPEIGNLGLLFMFNLSSNHLSGEIPKSYGRLAQLNFLDLSNNNFSGSIPKELGDCDRLLSLNLSQNNLSGEIPYELGNLFFLQILLDLSSNSLSGAIPPNLGKLAALEILNVSHNHLSGTIPQSLSSMISLQSIDFSYNYLSGSIPTGRVFQTATAEAYVGNSGLCGEVKGLTCPNVFSPHKSGGVNKKVLLGVMIPVCVLFIGMIGVGILLCRRHAKKHLDEESKSIEKSDESISMVWGRDVKFTFSDLVKATDDFNDKYCIGKGGFGSVYRAQLLTGEVVAVKRFNISDSDNIPAVNRQSFENEIKSLIGVRYRNMIKLYGFCCWRGQMFLVYEHVDRGSLAKVLYGEEGKLELSWAARLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSNTSTWTSVVGSYGYMAPGT 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02893 1107 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 538 851 - -
Pumo5g02893 1107 Gene3D Ribonuclease Inhibitor 193 292 IPR032675 -
Pumo5g02893 1107 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Pumo5g02893 1107 SMART LRR_typ_2 441 465 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 320 344 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 489 513 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 705 729 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 657 681 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 272 296 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 778 802 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 609 633 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 102 126 IPR003591 -
Pumo5g02893 1107 SMART LRR_typ_2 150 174 IPR003591 -
Pumo5g02893 1107 Gene3D Phosphorylase Kinase; domain 1 891 1011 - -
Pumo5g02893 1107 FunFam Os07g0541700 protein 1012 1098 - -
Pumo5g02893 1107 FunFam MDIS1-interacting receptor like kinase 2 32 193 - -
Pumo5g02893 1107 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1057 1069 IPR008266 GO:0004672|GO:0006468
Pumo5g02893 1107 SUPERFAMILY Protein kinase-like (PK-like) 909 1105 IPR011009 -
Pumo5g02893 1107 Pfam Leucine Rich Repeat 781 801 IPR001611 GO:0005515
Pumo5g02893 1107 FunFam MDIS1-interacting receptor like kinase 2 371 537 - -
Pumo5g02893 1107 Gene3D Ribonuclease Inhibitor 293 390 IPR032675 -
Pumo5g02893 1107 Gene3D Transferase(Phosphotransferase) domain 1 1012 1107 - -
Pumo5g02893 1107 ProSiteProfiles Protein kinase domain profile. 931 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02893 1107 SUPERFAMILY L domain-like 563 828 - -
Pumo5g02893 1107 Pfam Protein kinase domain 933 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02893 1107 ProSitePatterns Protein kinases ATP-binding region signature. 937 959 IPR017441 GO:0005524
Pumo5g02893 1107 PANTHER RECEPTOR-LIKE PROTEIN 55 657 1105 - -
Pumo5g02893 1107 Gene3D Ribonuclease Inhibitor 391 539 IPR032675 -
Pumo5g02893 1107 Gene3D Ribonuclease Inhibitor 540 850 IPR032675 -
Pumo5g02893 1107 SUPERFAMILY L domain-like 49 383 - -
Pumo5g02893 1107 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Pumo5g02893 1107 FunFam Leucine-rich repeat receptor protein kinase MSP1 894 1011 - -
Pumo5g02893 1107 SUPERFAMILY RNI-like 312 647 - -
Pumo5g02893 1107 FunFam Leucine Rich Repeat family protein, expressed 194 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02893 Pumo-Chr5 76219442 76223006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02893 4 651 Receptor kinase-like Gene Family AT4G08850 32.000 4.33e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo5g02893 Pkinase 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02893 - - gmx:100786462 1868.2