Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02892 ATGACAAGTTTTCAAAACGTTCATGCTCTTCTCTTTCATATACTCTTGCTATCTTTGCTTCCATTGAAAATCACTTCATCACAAAGAACAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTCTATCCCCTCCTCTTCCTCCCTCTCTAAACTCATCATGGTCCCTGACCAACCTTGGCAACCTTTGCAATTGGGATGCCATTGGTTGTGACAACACTAACACAACAGTCTCACAGATAAACTTGTCTGATGCCAATCTCACTGGCACTCTCACTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTCAATGGCAACCATTTTGGTGGGTCAATACCATCAGCAATTGGCAACCTCTCCAAGCTCACTTTATTAGACTTGGGTAACAACTTATTTGAAGACACACTGCCTTATGAACTAGGCCAGCTAAGGGAGCTTCAATATCTTAGTTTATACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAACTACTTTATAACTCCTCCTGACTGGTCCCAATATTCATGCATGCCTTCCTTAACTCGCCTTGCTTTGCATCTGAATCCATTACTCATTGGTGAATTCCCAAGTTTCATACTGGAGTGCCATAACTTGACATACCTCGACATCTCTCAGAGTCACTGGAATGGAACAATACCAGAATCCATGTATAGCAATTTGGCCAAGCTAGAATACCTCAACCTCACCAACACATGGCTAGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGATCTTCGTATGGGTAATAACATGTTTAATGGTTCTGTTCCCACCGAGATAGGATTGATATCTGGGCTTCAATTTCTTGAATTGAATAACATTTCTGCCCATGGGAAAATTCCTTCTTCCTTAGGCCAACTCAGGGAGCTATGGCACCTTGATCTCAGTATAAATTTTTTTAACTCTACCATCCCTTCTGAGCTTGGTCTATGCACAAATCTATCCTTCTTGAGTTTAGCAGTGAATGGTTTGACTGGTCCTTTGCCTTTGTCATTAGCTAATCTGGCAAAAATATCAGAATTGGGATTATCAGATAATTCCTTTTCTGGTCAACTTTCTGCTTCACTCATCTCAAATTGGACCCAATTGATCTCCTTGCAAATCCAAAACAATAAATTTACAGGAAACATTCCTCCACAGATTGGCTTGTTGAAAAAAATTAACATCCTCTATCTGTACAATAATCAGTTCTCTGGTCCCATTCCTGCAGAGATTGGAAGCCTGAAGGAAATGACACAATTGGACCTTTCACAAAACGGATTCTCTGGTTCAATTCCATCAACACTTTGGAATCTGACAAACATTCAAGTGGTGAATCTTTTCTTCAATGAACTCTCTGGAACCATTCCCATGGATATTGGAAACTTGACCTCACTGCAAATCTTTGATGTCAACACCAATAACTTGAATGGGGAGTTGCCAGAAACCATTGCTCAACTACCTGCTTTAAGCTATTTTTCTGTGTTCACCAATAACTTCTCTGGCAGCATTCCCCGAGAATTTGGAAAGAGTAGTCCTTCTTTGACTCATGTCTACCTTTCAAACAACAGCTTCTCTGGACAACTGCCTCCTGACTTGTGCAGTGATGGCATGCTAAATATTTTGGCAGTCAATAACAACAGCTTTTCTGGGCCGTTGCCAAAGTCCTTGAGAAATTGTTCATCACTAACTAGAGTTCGGCTTGATGATAATCAGTTAACTGGAAACATCACAGGTGCATTTGGGGTACTCCCAAATCTTATTTTTATTTCACTTGGTAGAAATCAGCTGGTTGGTGAGCTCTCCCCAGAGTGGGGTGAATGTGTCAACTTAACTCGGATGGATATGGAAAGCAACAAACTTTCTGGAAAAATTCCATCTGAACTAAGTAAGTTGAGTAAATTAGGATATCTAAGCCTGTATTCCAATGAATTCACTGGCAATATCCCACCTGAAATTGGTAATTTAGGCCTGCTTTTCATGTTCAACTTGAGTAGTAACCATTTATCAGGAGAAATCCCAATGGGTTATGGCAGATTGGCTAAGCTAAATAGTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAAGAGCTCGGTGATTGTAATCAATTACTGAGCCTGAATTTAAGCCATAACAATCTATCCGGGGAGATACCATATGAACTTGGCAATCTGTTCTATCTCCAAATCATGTTGGACCTCAGCAGCAACTCTCTTTCTGGAGCTATTCCCCCAAACCTTGGAAAGTTAGCAGCATTGGAGATTCTCAATGTCTCACACAACCATCTATCAGGGACAATCCCACATTCATTTTCAAGCATGCTCAGCCTTCAATCTATTGATTTTTCTTACAACAACTTGAGTGGTTCAATCCCCACAGGTCGTGTTTTCCAGACAGCAACTGCTGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACCTGTCCCAAAGTGTTTTCCCCAGACAAATCCGGAGGGGTTAACAAAAGGGTTCTTCTTGGTGTTACCATACCAGTTTGTGTCTTATTTATTGGGATGGTTGGTGTTGGAATCCTACTATGCCGGCGGCACGCCAAAAAACGCCTTGATGAAGAGTCCAAAAGCATTGAAAAAAGTGATCAGTCCATTGACATGGTATGGGGAAGAGATGGAAAATTTACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACATGTACTGCATTGGAAAGGGAGGATTTGGAAGTGTTTATAGAGCACAATTACTCACAGGTCAAGTTGTTGCTGTTAAAAGGCTCAACATATCAGACTCTGATGACATTCCAGCAGTGAACCGCCAGAGCTTTCAGAATGAGATAGAATCACTTACAGGAGTGAGGCATCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGCAGGGGACAAATGTTCTTGGTTTATGAACATGCACACAGAGGAAGTCTGGCAAAAGTATTGTATGGTGAGGAAGGAAAATCGGAGCTAAGTTGGGCCACAAGGGTGAAAATTGTGCAGGGAATAGCACATGCAATTTCATACCTGCACAGTGACTGCTCCCCACCCATTGTGCACCGGGATGTAACACTGAATAATATTCTACTAGACTCGGACTTAGAACCTCGTGTTGCAGATTTTGGCACAGCAAAGCTGCTAAGCTCAAACACTTCAACATGGACCTCAGTTGCTGGATCCTTTGGCTACATGGCTCCAGGTACATCATCCAACCATTTTGAATTCTAG 3342 0.4153 MTSFQNVHALLFHILLLSLLPLKITSSQRTEAEALVKWKNSLSPPLPPSLNSSWSLTNLGNLCNWDAIGCDNTNTTVSQINLSDANLTGTLTALDFASLPNLTQLNLNGNHFGGSIPSAIGNLSKLTLLDLGNNLFEDTLPYELGQLRELQYLSLYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSQYSCMPSLTRLALHLNPLLIGEFPSFILECHNLTYLDISQSHWNGTIPESMYSNLAKLEYLNLTNTWLEGKLSPNLSMLSNLKDLRMGNNMFNGSVPTEIGLISGLQFLELNNISAHGKIPSSLGQLRELWHLDLSINFFNSTIPSELGLCTNLSFLSLAVNGLTGPLPLSLANLAKISELGLSDNSFSGQLSASLISNWTQLISLQIQNNKFTGNIPPQIGLLKKINILYLYNNQFSGPIPAEIGSLKEMTQLDLSQNGFSGSIPSTLWNLTNIQVVNLFFNELSGTIPMDIGNLTSLQIFDVNTNNLNGELPETIAQLPALSYFSVFTNNFSGSIPREFGKSSPSLTHVYLSNNSFSGQLPPDLCSDGMLNILAVNNNSFSGPLPKSLRNCSSLTRVRLDDNQLTGNITGAFGVLPNLIFISLGRNQLVGELSPEWGECVNLTRMDMESNKLSGKIPSELSKLSKLGYLSLYSNEFTGNIPPEIGNLGLLFMFNLSSNHLSGEIPMGYGRLAKLNSLDLSNNNFSGSIPKELGDCNQLLSLNLSHNNLSGEIPYELGNLFYLQIMLDLSSNSLSGAIPPNLGKLAALEILNVSHNHLSGTIPHSFSSMLSLQSIDFSYNNLSGSIPTGRVFQTATAEAYVGNSGLCGEVKGLTCPKVFSPDKSGGVNKRVLLGVTIPVCVLFIGMVGVGILLCRRHAKKRLDEESKSIEKSDQSIDMVWGRDGKFTFSDLVKATNDFNDMYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPAVNRQSFQNEIESLTGVRHRNIIKLYGFCSCRGQMFLVYEHAHRGSLAKVLYGEEGKSELSWATRVKIVQGIAHAISYLHSDCSPPIVHRDVTLNNILLDSDLEPRVADFGTAKLLSSNTSTWTSVAGSFGYMAPGTSSNHFEF 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02892 1113 Gene3D Transferase(Phosphotransferase) domain 1 1012 1110 - -
Pumo5g02892 1113 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 667 1104 - -
Pumo5g02892 1113 ProSiteProfiles Protein kinase domain profile. 930 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02892 1113 SUPERFAMILY L domain-like 537 827 - -
Pumo5g02892 1113 FunFam MDIS1-interacting receptor like kinase 2 28 190 - -
Pumo5g02892 1113 Pfam Leucine rich repeat 100 160 IPR001611 GO:0005515
Pumo5g02892 1113 Pfam Leucine rich repeat 759 814 IPR001611 GO:0005515
Pumo5g02892 1113 SUPERFAMILY Protein kinase-like (PK-like) 913 1104 IPR011009 -
Pumo5g02892 1113 Gene3D Ribonuclease Inhibitor 388 510 IPR032675 -
Pumo5g02892 1113 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Pumo5g02892 1113 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Pumo5g02892 1113 Gene3D Phosphorylase Kinase; domain 1 890 1010 - -
Pumo5g02892 1113 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 536 850 - -
Pumo5g02892 1113 SUPERFAMILY L domain-like 216 530 - -
Pumo5g02892 1113 Pfam Protein kinase domain 933 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02892 1113 FunFam Leucine-rich repeat receptor protein kinase MSP1 893 1010 - -
Pumo5g02892 1113 Gene3D Ribonuclease Inhibitor 190 288 IPR032675 -
Pumo5g02892 1113 Gene3D Ribonuclease Inhibitor 289 387 IPR032675 -
Pumo5g02892 1113 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1056 1068 IPR008266 GO:0004672|GO:0006468
Pumo5g02892 1113 SMART LRR_typ_2 487 511 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 147 171 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 704 728 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 537 560 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 801 826 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 608 632 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 777 800 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 439 463 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 99 123 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 656 680 IPR003591 -
Pumo5g02892 1113 SMART LRR_typ_2 318 342 IPR003591 -
Pumo5g02892 1113 FunFam MDIS1-interacting receptor like kinase 2 194 387 - -
Pumo5g02892 1113 FunFam Os07g0541700 protein 1012 1097 - -
Pumo5g02892 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 388 480 - -
Pumo5g02892 1113 SUPERFAMILY RNI-like 72 312 - -
Pumo5g02892 1113 Gene3D Ribonuclease Inhibitor 511 849 IPR032675 -
Pumo5g02892 1113 ProSitePatterns Protein kinases ATP-binding region signature. 936 958 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02892 Pumo-Chr5 76209268 76212609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02892 25 650 Receptor kinase-like Gene Family AT4G08850 32.057 8.82e-78 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo5g02892 Pkinase 6.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02892 - - gmx:100809137 1850.48