Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02888 ATGGATGATTCTGGAAGTAAAACTAAACTGTTGAATCCATGGATGCTTCACTTTCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCGATTCCTGTTTGGCTGATTGCATAACGGCTGGGTCTGAATGTGCTGTTTGTAAGGCAAAGTATGCTCAAACAGATGTAAGGCATGTGCCTTTTGTGGAAAATGTGGTAGCAATATATAAAAGCTTGGATGCAACCTTTTGTGCTAGTGTGTTTCAGCAACGTTCTTCTGGTGATGGGAGGGTTTTGGAGCCATGTCAAGCAATTCTTAATTCAACTTCTAGTAGTATAAAAGCTGGCAAGCTTCCTCGAAATTTACCTAATTCGAATGAGGTTGGGGTTGGCAAGAATTTCAAATCCAAGATTGCAGTGCATGATAAAGCTGAGGAGCTTGAGTTGTGTCGTGGGAGAGGGAAGCCCAATCCAATGCAATCATCCCAGATGGGGCTTGGGGGCCGTGAAGAGTGTGGAGTTGTGGAAATGGATGTGAATCAAGTGACACAATCAGCACCGGATAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGTAGTGATCAAGACAGTGAGCATCCATTACCTCCTGGTAGATTGGGAAATTCTTCATTAAATAGAGCAAGCACAGGAAATGGCAATTTGAAAGAAAGAATGGGACAGTTAAGGTCTGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGCAAGGGATCTCAAGAGACATAAATCTGGAAAAGGCCCAGGTGCACAGTTGCCCACAAATGACTTGTGTTCAACTGGAAGTATATGTTCATTTTGCCTAACCTTTAAAGTCTCAGAGGCTACTGGACCAATGCTGCATTATGCAAATGGGAACTTAGTTACAGGAGATGCAGCAATGCAACCAAATGTCATACCTGTGCATAGAATTTGCATCGACTGGGCACCCCAAGTGTACTTTGTTGGTGAAGTGGTTAAGAATTTGAAGGCTGAGGTGGCAAGGGGAGCAAAGCTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGGAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAAATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTGTTCATTCAAATGTCAAATTTCCATGTGAGAAAACCAGGTCTAAGAAACAGGCAACTCAGAAGCATCCCACTTTGTCTCATCTGCCGTCTCACCACTCAAATCCTCTTGAAGCTTCACAGGATGATAGTAAAAAAATGGTTTTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTACTTTTGATCAATTATGCAAGTAAGATTGGTGCTACTGTGACCAAGTTCTGGACCTCAAATGTCACCCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACCTTGAAAGTTCTCATGGCAATTCTAAATGGACGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGGAAGAGATAAATCCTGCAGAGGAAGAACCATATGAAATTAATGTTGACAACCAAGGGTGTGAAGGTGGTCCAAAAGCTGGCAGACTTAGGATATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCAACTTACAAGGAAGATCTTGAAGAATTAATTGAAGTTGGGGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAAGCACAAAGACATGGATGCAAAGGGGATTCTCCAAAGTTGCTGGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTGGGGGAGGAAGTTTCAATTCTTTGGCAAAGGCTAAACGACGCAGAGGATTTAGCTGCTAACACTTTACAAGTCATTGGTCACACGTGGATTCTTGAATCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAACTAA 2013 0.4252 MDDSGSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCDSCLADCITAGSECAVCKAKYAQTDVRHVPFVENVVAIYKSLDATFCASVFQQRSSGDGRVLEPCQAILNSTSSSIKAGKLPRNLPNSNEVGVGKNFKSKIAVHDKAEELELCRGRGKPNPMQSSQMGLGGREECGVVEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPGRLGNSSLNRASTGNGNLKERMGQLRSESSASETEGLARDLKRHKSGKGPGAQLPTNDLCSTGSICSFCLTFKVSEATGPMLHYANGNLVTGDAAMQPNVIPVHRICIDWAPQVYFVGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISNCRWDHEDFLLLCPVHSNVKFPCEKTRSKKQATQKHPTLSHLPSHHSNPLEASQDDSKKMVFCGSALSNEEKVLLINYASKIGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMEEINPAEEEPYEINVDNQGCEGGPKAGRLRILANEPKLFSGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELEAQRHGCKGDSPKLLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02888 670 CDD BRCT_Bard1_rpt1 450 524 - -
Pumo5g02888 670 Pfam PHD-like zinc-binding domain 327 406 - -
Pumo5g02888 670 SUPERFAMILY BRCT domain 449 536 IPR036420 -
Pumo5g02888 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 408 IPR013083 -
Pumo5g02888 670 CDD RING-HC_AtBARD1-like 21 74 - -
Pumo5g02888 670 MobiDBLite consensus disorder prediction 421 442 - -
Pumo5g02888 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 97 IPR013083 -
Pumo5g02888 670 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Pumo5g02888 670 MobiDBLite consensus disorder prediction 256 270 - -
Pumo5g02888 670 FunFam Breast cancer associated RING 1 283 408 - -
Pumo5g02888 670 SUPERFAMILY BRCT domain 560 668 IPR036420 -
Pumo5g02888 670 MobiDBLite consensus disorder prediction 228 255 - -
Pumo5g02888 670 Gene3D BRCT domain 558 663 IPR036420 -
Pumo5g02888 670 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 164 668 IPR031099 GO:0006281|GO:0006974
Pumo5g02888 670 ProSiteProfiles Zinc finger RING-type profile. 27 65 IPR001841 -
Pumo5g02888 670 Pfam BRCT domain, a BRCA1 C-terminus domain 558 667 IPR001357 -
Pumo5g02888 670 FunFam Breast cancer type 1 susceptibility protein homolog 446 552 - -
Pumo5g02888 670 FunFam BRCA1-associated RING domain protein 1 558 663 - -
Pumo5g02888 670 Gene3D BRCT domain 445 551 IPR036420 -
Pumo5g02888 670 FunFam Breast cancer associated RING 1 12 97 - -
Pumo5g02888 670 Pfam Zinc finger, C3HC4 type (RING finger) 24 69 - -
Pumo5g02888 670 ProSiteProfiles BRCT domain profile. 446 535 IPR001357 -
Pumo5g02888 670 ProSiteProfiles BRCT domain profile. 556 670 IPR001357 -
Pumo5g02888 670 SMART BRCT_7 436 525 IPR001357 -
Pumo5g02888 670 SMART BRCT_7 558 663 IPR001357 -
Pumo5g02888 670 MobiDBLite consensus disorder prediction 422 439 - -
Pumo5g02888 670 SUPERFAMILY RING/U-box 24 87 - -
Pumo5g02888 670 MobiDBLite consensus disorder prediction 193 277 - -
Pumo5g02888 670 SMART ring_2 359 405 IPR001841 -
Pumo5g02888 670 SMART ring_2 27 64 IPR001841 -
Pumo5g02888 670 ProSiteProfiles Extended PHD (ePHD) domain profile. 286 406 IPR034732 -
Pumo5g02888 670 Pfam BRCA1 C Terminus (BRCT) domain 451 522 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02888 Pumo-Chr5 76165659 76171809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02888 479 592 Core DNA Replication Machinery Family AT4G02110 28.571 7.05e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02888 K10683 - gmx:100784883 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02888 5 76165659 76171809 Pumo5g02888 5 76165659 76171809 ECH