Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02885 ATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCCATAAGAAACATTCCCATTATTATGCCAATCCCCCAATGTCCATATACACAGCTGGATTGCTGTTGGAAGCAATTTTCCTAAAAGCGAAATGCTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTAAAGTTATTCTGGACATAGTCGAGTCTTCATTACCTGAAGGCTTGCCTCAAAACTTCGGTGAAGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGAATTGTGGAAGCTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCACTCCTTCACCAATGGAATCTTGACACAAAAACCATAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGCAATCCCCTCAAATCTTCGTTCCCATATGGACAACTCGTTTGTACCCAGAAACAACTTAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAATATCTCTAAATAAAATTGAGTGGGATCCGTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGGACTATCAATCGAAGAGAAAGGTACCATGCCTTATCTCTTTGTTATTATGGCGCATGTAATGACTTGGGAGCACTGAATCTTCTTAGGAAATTGTTGAGTAGTAGAGAGGACCCAAAACATGTTCCTTCTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACCCTGATCTTGCAACAGATGCGGCAAGCTTAGCTCGCAAAGCACTTGAAAACTTGGATGGAAGATGTGATCAATTGGAAAGTCTTTCCAGTTGCTTACTAGGTGTTTCACTTTCATCACACTCAAAATTTGCTATTTCTAATTCTGAGAGGGTTGAGAAACAATCTGAGGCACTTCATTCTCTGGAAACTGCAAGCAAAGTGACCAGAATAAGTAACCCCCTTGTAATATACTATTTGAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCTGCACTTCATCATGCAAAATGCTTTCTAAACTTGGAAGCTGGATCTAATGTTAAAGGGTGGTTATTATTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTCAATGAAGCTTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTACTGCGAACAAAAGCTAAACTACAAATTGCACAGGGCAAGTTGAAGAGTGCCATTGAAACATATAGTCAGCTTCTTGCTATTCTCCTAGTTCAGAGAAAAACTTTTGGTTCAAGGAAGAAGCTGTATAAGGACTACATAGATCATGCTAGCAACATGGAAGTGGAAATATGGCATGATCTTGCTTATGTGTATATAAGCCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACAATGTACGAAGCAAAGGGCCTTTACAAAGAGGCTTTAAAAGCTTTTCGTGATGCTTTGAATATTGATCCCGGCCATGTCCCTAGCTTGATCTCTACTGCGGTGGTTCTTAGACGTTGCAGTAATCGATCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTCCGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCATTTTTCACAAGGATGAGGGTACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCAAACTTTCTTGAAGAATCGACTCCAGTTGAACCTTTCAGATGA 1833 0.4043 MKISLAKSRERHKKHSHYYANPPMSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDIVESSLPEGLPQNFGEEGKLQETLSKVVELLPELWKLADSPRDVILSYRRALLHQWNLDTKTIAKIQKEFVVFLLYSGGEAIPSNLRSHMDNSFVPRNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLTALANQWEELLPGTINRRERYHALSLCYYGACNDLGALNLLRKLLSSREDPKHVPSLLMASKICCENPDLATDAASLARKALENLDGRCDQLESLSSCLLGVSLSSHSKFAISNSERVEKQSEALHSLETASKVTRISNPLVIYYLSLECAEQRKLDAALHHAKCFLNLEAGSNVKGWLLLARILSAQKQFLDAESIVNEALDQTGIWDQGELLRTKAKLQIAQGKLKSAIETYSQLLAILLVQRKTFGSRKKLYKDYIDHASNMEVEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGLYKEALKAFRDALNIDPGHVPSLISTAVVLRRCSNRSNPAIRSFLMDALRHDRLNASAWYNLGIFHKDEGTMLEAAECFETANFLEESTPVEPFR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02885 610 Gene3D Tetratricopeptide repeat domain 29 442 IPR011990 GO:0005515
Pumo5g02885 610 ProSiteProfiles TPR repeat profile. 571 604 IPR019734 GO:0005515
Pumo5g02885 610 SUPERFAMILY TPR-like 322 491 IPR011990 GO:0005515
Pumo5g02885 610 Gene3D Tetratricopeptide repeat domain 443 606 IPR011990 GO:0005515
Pumo5g02885 610 SUPERFAMILY TPR-like 33 253 IPR011990 GO:0005515
Pumo5g02885 610 Pfam Tetratricopeptide repeat 502 533 IPR019734 GO:0005515
Pumo5g02885 610 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Pumo5g02885 610 Coils Coil 275 295 - -
Pumo5g02885 610 SMART tpr_5 375 408 IPR019734 GO:0005515
Pumo5g02885 610 SMART tpr_5 501 534 IPR019734 GO:0005515
Pumo5g02885 610 SMART tpr_5 571 604 IPR019734 GO:0005515
Pumo5g02885 610 SMART tpr_5 411 444 IPR019734 GO:0005515
Pumo5g02885 610 SMART tpr_5 467 500 IPR019734 GO:0005515
Pumo5g02885 610 SMART tpr_5 33 66 IPR019734 GO:0005515
Pumo5g02885 610 PANTHER PROTEIN NPG1 1 610 IPR043376 -
Pumo5g02885 610 SUPERFAMILY TPR-like 412 597 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02885 Pumo-Chr5 76128524 76132780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02885 7 610 Calmodulin-binding Proteins AT4G28600 57.586 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02885 K21843 - gmx:100784353 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02885 5 76128524 76132780 Pumo5g02885 5 76128524 76132780 ECH
Pumo3g02479 3 37650464 37656731 Pumo5g02885 5 76128524 76132780 PCT