Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02877 ATGATGGATCATGTTATTGGTGGGAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTGAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGACTACAATGTCATGGCAATCGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTAATGGGCCTAGGACGGAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCTAGTGTCAACACTCATCTTGGAATAGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTCCGATAGAGGTGCTCTGCAAATCATATCCCTCAGAGTTTGTATCATATTTTCACTATTGCCGATCATTGCGGTTTGAGGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCGCAGATTGGTGGCAGCAGCTCTAGAGGGCGGCATGAAAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAAATATCAGTTGGCAAAGAGATTCGAGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCCCGGAGGAACCCAACAAGTTCTAGTCCTCATGGTGATCACTCCAAACATAGGAGTTTTGAGGAAGTAGCAGTACACAAGGATGTGTATCATGATCAAGAGAAGGGACGCAATTCGTCTCGATATGGCAGCAGTTCAAGAAGAGCCATAATCTCATCATCAACCAGGCCAAGTTCCTCTGGTGATCATACTGACAGTCGTACTGGCCGGCTAACCTCGAGTGGAAGCCGACCATCTGCCACCCATAGAAATATTCAACCTATGTATGAGACCAAACAACCAACTTACACGCGTTCTGGATCCACCAGAGGCAACCGCGATGATCCTCTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1395 0.4301 MMDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSSRGRHESGKAAMHAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPHGDHSKHRSFEEVAVHKDVYHDQEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSSGSRPSATHRNIQPMYETKQPTYTRSGSTRGNRDDPLRSFELLSIRK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02877 464 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02877 464 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Pumo5g02877 464 MobiDBLite consensus disorder prediction 302 464 - -
Pumo5g02877 464 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02877 464 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Pumo5g02877 464 MobiDBLite consensus disorder prediction 448 464 - -
Pumo5g02877 464 FunFam Casein kinase 1-like protein 2 332 - -
Pumo5g02877 464 PANTHER CASEIN KINASE-RELATED 9 414 - -
Pumo5g02877 464 MobiDBLite consensus disorder prediction 383 447 - -
Pumo5g02877 464 FunFam Putative Casein kinase I 2 86 - -
Pumo5g02877 464 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Pumo5g02877 464 MobiDBLite consensus disorder prediction 327 341 - -
Pumo5g02877 464 CDD STKc_CK1_delta_epsilon 9 283 - -
Pumo5g02877 464 MobiDBLite consensus disorder prediction 353 382 - -
Pumo5g02877 464 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02877 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02877 Pumo-Chr5 76059088 76065884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02877 3 214 Miscellaneous Gene Families AT1G29230 27.397 1.20e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pumo5g02877 Pkinase 2.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02877 K08960 - gmx:100781494 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02877 5 76059088 76065884 Pumo5g02877 5 76059088 76065884 ECH
Pumo5g02877 5 76059088 76065884 Pumo3g02474 3 37583743 37590509 PCT