Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02876 ATGGATTCTGCAAGGAGTTGGTTACAGAAATTCCAGCCACGTGATAAATTGAGAGCCTCTACGAGAAAGAAGGACGATATTAATGACGGAAACGAAGTTCCGAATGTGCCTATGGATGAAGCAACTCTTTCCAATATCACGAAACAAAAGGTTGCGGCAGCAAAACAATACATTGAGAACCATTACAAGGAACAAATGAAAAACCTTCAAGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCAGACGCTGATGTCTCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGATGATTTTGAGTTATTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAGACTACAGATCATGTATATGCAATGAAAAAGTTAAAAAAATCAGAAATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAGTATTTGTATCTTATTATGGAATACCTACCGGGTGGGGATATGATGACTCTACTCATGAGAAAGGATACCTTGACTGAAGATGAAGCTCGATTTTATGTGGGAGAAACAGTTCTAGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTGTTACTCGATAGATATGGACACTTGAGACTGTCAGATTTTGGACTATGTAAACCATTAGACTGTAGTACACTAGAAGAATCAGATTTTTCCACAAGTCAAAATGCAAATGGATCTACACAAAATGATGAACATGCAGCTCCAAAACGCACACAACAAGAACAATTGCAACATTGGCAGAAAAATAGAAGGACACTCGCATATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTTTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCCGATGATCCAATGTCAACATGTAGGAAGATAGTAAATTGGAAATCTCACTTAAAATTTCCTGAAGAAGCAAGGTTATCCCCAGAGGCTAAAGATCTCATAAGTAAGCTTTTGTGTAATGTTAACCAAAGGTTGGGCTCAAATGGTGCAAATGAAATAAAGGCTCATTCATTCTTCAATGGTGTTGAATGGGACAAATTGTATCAAATGGAAGCGGCATTTATTCCTGAGGTCAATGATGAGTTGGATACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACAATCAAACTCAATCATCATCAAGAGCTGGTCCATGGAGGAAGATGCTTTCTTCTAAAGACTTGAATTTTGTGGGATACACATACAAAAATTTTGAAATTGTCAATGACTATCAAGTTCCTGGAATGACTGAATTGAGGAAGAAAACAACCAAAACAAAGAAGCCATCTGTCAAGTCCCTATTTGATTGTGAGTCTGAGGCATCTGAGGCTTCAGATTCAGCTGCAAGCATAATTAAGAAGTCTGATGATCTACCTCCTCAGCCAGAATAA 1629 0.3769 MDSARSWLQKFQPRDKLRASTRKKDDINDGNEVPNVPMDEATLSNITKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEESDFSTSQNANGSTQNDEHAAPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVNQRLGSNGANEIKAHSFFNGVEWDKLYQMEAAFIPEVNDELDTQNFEKFEESDNQTQSSSRAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMTELRKKTTKTKKPSVKSLFDCESEASEASDSAASIIKKSDDLPPQPE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02876 542 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02876 542 MobiDBLite consensus disorder prediction 279 306 - -
Pumo5g02876 542 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02876 542 CDD STKc_NDR_like 118 482 - -
Pumo5g02876 542 MobiDBLite consensus disorder prediction 1 38 - -
Pumo5g02876 542 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Pumo5g02876 542 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pumo5g02876 542 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Pumo5g02876 542 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02876 542 MobiDBLite consensus disorder prediction 9 30 - -
Pumo5g02876 542 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Pumo5g02876 542 CDD MobB_NDR_LATS-like 54 115 - -
Pumo5g02876 542 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Pumo5g02876 542 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Pumo5g02876 542 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Pumo5g02876 542 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Pumo5g02876 542 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pumo5g02876 542 MobiDBLite consensus disorder prediction 515 542 - -
Pumo5g02876 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 470 - -
Pumo5g02876 542 SUPERFAMILY Protein kinase-like (PK-like) 93 471 IPR011009 -
Pumo5g02876 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pumo5g02876 542 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02876 Pumo-Chr5 76043403 76048893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02876 1 517 AGC Kinase Gene Family AT2G20470 79.119 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Pumo5g02876 Pkinase 4.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02876 K08790 - gmx:100805940 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02876 5 76043403 76048893 Pumo3g03636 3 76989000 77005127 PCT
Pumo3g02471 3 37550125 37558597 Pumo5g02876 5 76043403 76048893 PCT