Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02872 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGACCTCCACATATGCGAACCATGGCAACTTCCTGAGGTGGCTAAGCTGAATGCAAATGAGTGGTACTTCTTCAGCTTCCGGGACCGGAAATATGCGACGGGGTTTCGAACGAACCGTGCAACCACATCGGGGTATTGGAAAGCAACGGGGAAGGATCGAACGGTGATTGATCCAGCCACGCAAGAGGTTGTAGGGATGAGGAAGACACTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACCGAATGGATCATGCATGAGTTCCGCTTGGAGACCCCACATATGCCTCCAAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATAACAACAACAGTTCCAATCTCGTGTATGAGACAACAACACCTCCATCCCTAACTTCTTTGGCTTCGTCATCTCCCACCAACCAAATTGCCATGCCTCCTGGTGGGTATAACCGACTTGCCTCTTTCTCTTCCTCTTCCTCCATGCCAACTCACCATCATCACTTCAACCCAACCCAAAACGCTTCTTCCTTGATGGATCTCCTTCACTTCTCGAGGGAAACCAACACCACCAACAATAGCATCCTTGCTCAAATTAGTGCCAAAGGTGATGATGGATATGGTTTCTTATGGGACATGGATCTAGAACAAAATAGCCTAGAGGATGGCGTGGCTTCAAACTTGGACGCAATAAGATTCGAGGTTGATAATAATAATAATATGCTATTGCTATAA 873 0.4685 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVIDPATQEVVGMRKTLVFYRNRAPNGIKTEWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNNSSNLVYETTTPPSLTSLASSSPTNQIAMPPGGYNRLASFSSSSSMPTHHHHFNPTQNASSLMDLLHFSRETNTTNNSILAQISAKGDDGYGFLWDMDLEQNSLEDGVASNLDAIRFEVDNNNNMLLL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02872 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 218 - -
Pumo5g02872 290 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Pumo5g02872 290 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Pumo5g02872 290 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Pumo5g02872 290 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02872 Pumo-Chr5 75950433 75957647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02872 6 159 NAC Transcription Factor Family AT1G56010 58.025 5.67e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g02872 NAM 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02872 - - gmx:100782751 509.605