Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02870 ATGATGGAAACAGATTGTGGAAAGGATTGCACCAAATTTGAGAAGAGAGAAAATCTTTCTGTTCCCCCCGGTTTTGCATCCCTGACATCTTTCATTTTGAAAAGGGGTGGAAATGTTAAGAAAATTGATAAATCTACAACCTTTCCAATTTCATCTGAACTCCCAATCTGCACGGAGACTATACCTGAGATGAATGACATTACTGCTTATAGCCAGGTTCTTATGCATCGGCCGTGGATAATCTCAGACCAGAGCAACCACCGCAAACCTGAGGAATCTCACACAAGGCATCTTCCTATGGATCCCCCTTTAAATGCTGGTCGTCCAAAAGGGACCATACATGGATGTCCAAACTGCAGTAATTGTCTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGTGATAAGAGATGTTTTGGAAGAAGCTCCTATTTTCCACCCCACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAGAGCAGAACCTTATGGAATTTGCCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGCTTTCTTGAGAAAAAGAACATATGGGAAAAGTCTGAATTTGTTGCTCAGCTTCAGCGAATTGATGGACACCAAGTTCAGCATGCACAAGAAATTATGGCTAGTGCTTGTGGAAATACAAAAACCAAGAGAAAAAGAAATGTAAAAGTAGCTTTGGACTCTAAGCTTGGTAATAGAAACACCAGCACTCCAAATAACCAGAATGTTGAAGAATGTGACTGCGAGTCTGAACCTGGTCCTAAATTCAGTCTCAATACATTTAAGAAATATGCAGATATATTTAAGAGCCAGTACTTCGATTACAAGGATAAGAAGAAGATTATAGGTTCCAATATAAAATTAGCTATACGTCAGCAGTGGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGACGGATTGTTCGAAATCCAACTGAAGAAATCAAGGTGCTTTGTGGTAACACTTTGGAGGCTGGAGTTCTTAGCAGTGGATTTCCGACAGTTTCTGATCCTGTGGAGGCAGACACTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATACTTTCACTGTCAGGTTCCCTTCTTTCTTTTGAAAGCTCTGAAGCTTCACGTAATTTTGCCCCCAAGATTCATTTGGGAATGTGCTTCTCTCCACTCAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATCTTACGTGCATTTGGGTGAACCAAAAGTATGGTATGGTGTCCCAGGAAGATTTGCTGTTAGCTTTGAAACAATTTGGAAGAAGTATCTCCCAGATTTGCATGCAGGACAGACTGATATGCATGATAATGTGGTGATGCAGCTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGTGTTCAGTATCCTCGTGAGTTTGTTCTTGTCTTCCCCGGGGCATATCATTCCGGATTTGATTGTGGCTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCACGGACAGAATGTTGTAGAGCTATATTGTGAACAGAGGAGAAAGACATTATTTTCATATGATAAGCTTTTGCTAGGAGCAGCAAGGGAAGCTGTGAGGGCCCAATGGGAAACTAATCTGTGCAGGAAGAGCACATCATCAGACAGCTTAACATATAAAGATGCCTATAAAAAAAATGCGTTCTTAACAAAAGCTTTGAACTCTCGCATCCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTGCACTTCTTTGGTATCACAAAGAATGGATGAAAATTTTTATGCCACTTGTAAAAGGGAATGTAGTATTTGCCTGCGTGATTTACACTTGTCTGCTGTAGGGTGTTCATGTTCAGATGACAAGTTTGCATGTCTTGATCATGCAAAACAGCTTTGTTCTTGCACTTGGAGCAACAAAACTCTCTTCTACCGTTATGAAATCAGTAATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTTTAAATGGGCCAAAGAGGATCTTGGATTAAGTCTGAACTCTGTTGCCTCCAGGAGATCAAAACAAAGCCCAGAAAACGTAAGTGATTCAACCCACCCTTCGCAAGACTTGCAGATGAAGGAACCTGTATCCCAGACAGCGTTGGATGAATCCTCAAAGGGGAAACGACCTCAATTGCAGGATATATTGAATTCATCAAAAAAGAAACAAAATGAAGTGGTTCCGAATTCATCAAAGAAGAAAAAAAATGAAGTGGTTCCGAATTCATCAAAGAAACAAAATGTAGTGGCTTCCCAAGTTGTGCAGACTTCTGGTGGCACTCATGGCATTCATTCAAAAATGAAGACTAGTTTACTTCACTCAACCGTTGCTGATACGAAAGGAATAAATTCTGTTGGCACCAAAATTGATACGAAGACACTTGGGCGTAAGTTTACAATTTCAAAGAAAGTAGGAGATCCAAAAGTATCTAAAGTTCCTTCAGTTACAAACTCACGTTACTTGTCTTTTGTACAAGACAACGTGTTAGTTGATGTTTCATCTGATAGTATGAGCACGTCTACGTCGTCAGATTCTGAAGATGTGGAAGTTGCTAATGGCTAA 2631 0.4029 MMETDCGKDCTKFEKRENLSVPPGFASLTSFILKRGGNVKKIDKSTTFPISSELPICTETIPEMNDITAYSQVLMHRPWIISDQSNHRKPEESHTRHLPMDPPLNAGRPKGTIHGCPNCSNCLKVTARWHPEDVIRDVLEEAPIFHPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTCWKPPCFLEKKNIWEKSEFVAQLQRIDGHQVQHAQEIMASACGNTKTKRKRNVKVALDSKLGNRNTSTPNNQNVEECDCESEPGPKFSLNTFKKYADIFKSQYFDYKDKKKIIGSNIKLAIRQQWEPSVENIEGEYGRIVRNPTEEIKVLCGNTLEAGVLSSGFPTVSDPVEADTYPEYLKSGWNLNNILSLSGSLLSFESSEASRNFAPKIHLGMCFSPLNWKVEEHHLYSLSYVHLGEPKVWYGVPGRFAVSFETIWKKYLPDLHAGQTDMHDNVVMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPLEWLLHGQNVVELYCEQRRKTLFSYDKLLLGAAREAVRAQWETNLCRKSTSSDSLTYKDAYKKNAFLTKALNSRIQSESLKRKFLCTSLVSQRMDENFYATCKRECSICLRDLHLSAVGCSCSDDKFACLDHAKQLCSCTWSNKTLFYRYEISNLNVLCQALDGKLSAVFKWAKEDLGLSLNSVASRRSKQSPENVSDSTHPSQDLQMKEPVSQTALDESSKGKRPQLQDILNSSKKKQNEVVPNSSKKKKNEVVPNSSKKQNVVASQVVQTSGGTHGIHSKMKTSLLHSTVADTKGINSVGTKIDTKTLGRKFTISKKVGDPKVSKVPSVTNSRYLSFVQDNVLVDVSSDSMSTSTSSDSEDVEVANG 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02870 876 MobiDBLite consensus disorder prediction 749 763 - -
Pumo5g02870 876 SUPERFAMILY Clavaminate synthase-like 353 548 - -
Pumo5g02870 876 MobiDBLite consensus disorder prediction 857 876 - -
Pumo5g02870 876 Pfam JmjC domain, hydroxylase 391 505 IPR003347 -
Pumo5g02870 876 SMART cupin_9 356 522 IPR003347 -
Pumo5g02870 876 MobiDBLite consensus disorder prediction 692 771 - -
Pumo5g02870 876 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Pumo5g02870 876 Pfam jmjN domain 143 176 IPR003349 -
Pumo5g02870 876 SMART JmjN_1 141 182 IPR003349 -
Pumo5g02870 876 MobiDBLite consensus disorder prediction 692 748 - -
Pumo5g02870 876 Gene3D Cupin 127 506 - -
Pumo5g02870 876 ProSiteProfiles JmjC domain profile. 356 522 IPR003347 -
Pumo5g02870 876 MobiDBLite consensus disorder prediction 85 109 - -
Pumo5g02870 876 PANTHER LYSINE-SPECIFIC DEMETHYLASE 139 774 - -
Pumo5g02870 876 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02870 Pumo-Chr5 75935954 75941580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02870 2 775 JUMONJI Transcription Factor Family AT1G08620 43.216 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo5g02870 JmjC 3.3e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02870 K11446 - gmx:100804864 1508.43