Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02867 ATGCATATAGGTCAAATAAATACAGCTTCAGTGAAATGTCTTGTCAACAGCATTTCTCGATTCATACATCTAGTTTCTTGCCAAGCAGTGAAACCTATGCCCCTTCAGAAGAACTGTAATAATATGGTTGGTGTGTTGAAGCGTTTGAAACCAGTGCTCGATGATATTGTGGATTTCAAAATCCCTTTGGATGAAAATCTGCATAGAGAATGTGAAGAATTGGATATGCAGGTTAATGAGGCTAGGGAGTTCATTGAAAAATGGGGCCCAAAGATGAGCAGGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCATATAAGATTTGTCACATGATAGTTAAATCCCTAAAGGCACCTGCATCTGTTTCAGTTTTGGGTAATCTTCAGCACTATATGCAGGAACTTCAGTGTCTTAAGAAGGAACCTGCAATGGTCTATATAGAAGAAGCACTGAGAAATCAAAGGGATAATATTGAGCCTTGCTATGATCCTCTAAAGGAAATTATAGGGTTACTCAAATTGACATCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGTCAATAAAACAAAAGGGGACTTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAATTTGCGTGATTATGCGATGAAATTTGAGCGCCCTGAAGTCAAAAGTGGTGTCTCAATTCCCCCATATTTTCGATGTCCTTTATCATTGGAACTCATGTCGGATCCTGTTATTGTGGCTTCTGGTCAGACTTATGAAAGGCATTCCATTCAAGAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAACACTCATCAAAGACTTGTCCATACAAATCTCATTCCCAACTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGTAACTCTAAGCAAAGTAATTCTGCTCATATTTCATCCCCCTCAGATCATTTATTACATCAAGATTTAGATCGTCTGTGTAGCTTTGAGTCTTCAGATAGTAGCAATTCCAATTCAAATCAAACTGCAAATGCATTTGAGAAGCAAAAGGATGATAACTCTTTCAGATCAAGCAGGGAATCCAATAGAAGCCAGAATGGAGAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTAATAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCAGTTTCAAAAGAGGTGTTAGGCATATCTAATAAGCATCAAAATGAGGAGTTGTCTGGAGAAATTACTAATGGGTGTCCTGCTTCTCCAGCATATAAAGAATCAGGGATTTATCCTTGGTTATCCGGAAAGCAATTTAATAGCCCTGGATCAAAAATTGGAAGGATGGAGGATGAAAATAAGTGTAATGAGAGTAACAATAATATTATTACTAGTCATTCAAAAGTTGCTTCCCATCCTGTTTCCAACTTAGGATCTGATGAATTGATCACCACATCCCATGTCAATGAGTTGATTGAAGACCTCCAGAGTCAATCGAATGAAACACAAACTGCTGCTGCAGAAGAATTGAGGCTCCGTACCAAGCATAACATGGAGAACCGCATCATTGTAGGGTGTGGGGCAATTATGCCTTTACTTTCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTACTGAATTTGTCAATTAATGAAGGCAACAAGGCCTTGATAATGGAAGCAGGGGCCATAGAACCACTTATCCATGTTTTGCAGACAGGGAATGATGGTGCAAAGGAGAATTCTGCTGCTGCTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGTCGTTCTGGTGCAGTTAAAGCTTTGGTGGGTCTTCTAGCTTCAGGAACTCTTAGGGGAAAGAAGGATGCTGCTACTGCATTATTCAACCTATCAATATTCCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCCGTGAAGTTTCTGGTTCTGCTATTGGACCCTACTGATAAAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGCCGAATAGAAATTGCAAGGGAAGGGGGCATTCCCTTACTTGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAACTATGTCTTCATAGTCGAAAGTTTTGTACCAGTTGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAA 2352 0.3984 MHIGQINTASVKCLVNSISRFIHLVSCQAVKPMPLQKNCNNMVGVLKRLKPVLDDIVDFKIPLDENLHRECEELDMQVNEAREFIEKWGPKMSRIHSVLQSGELLIKLQNSSYKICHMIVKSLKAPASVSVLGNLQHYMQELQCLKKEPAMVYIEEALRNQRDNIEPCYDPLKEIIGLLKLTSNQELLKESIAVEKERSNAEVNKTKGDLDEINQIVNLVCNLRDYAMKFERPEVKSGVSIPPYFRCPLSLELMSDPVIVASGQTYERHSIQEWLDHGLTVCPNTHQRLVHTNLIPNYTVKAMIANWCEENNVKLPSNSKQSNSAHISSPSDHLLHQDLDRLCSFESSDSSNSNSNQTANAFEKQKDDNSFRSSRESNRSQNGETEKFEQQSPAPSCSNSRSESFSSSISSTDYVLPVSKEVLGISNKHQNEELSGEITNGCPASPAYKESGIYPWLSGKQFNSPGSKIGRMEDENKCNESNNNIITSHSKVASHPVSNLGSDELITTSHVNELIEDLQSQSNETQTAAAEELRLRTKHNMENRIIVGCGAIMPLLSLLYSDMKITQEHAVTALLNLSINEGNKALIMEAGAIEPLIHVLQTGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVGLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVALLANLSTIAEGRIEIAREGGIPLLVEIVESGSQRGKENAASILLQLCLHSRKFCTSCSPRRSCTSPSCIISVWYSKSKGKGTTASQSFS 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02867 783 SUPERFAMILY ARM repeat 504 747 IPR016024 -
Pumo5g02867 783 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Pumo5g02867 783 FunFam RING-type E3 ubiquitin transferase 494 759 - -
Pumo5g02867 783 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Pumo5g02867 783 Gene3D - 482 757 IPR011989 -
Pumo5g02867 783 FunFam RING-type E3 ubiquitin transferase 241 313 - -
Pumo5g02867 783 PANTHER U BOX DOMAIN-CONTAINING 34 744 - -
Pumo5g02867 783 MobiDBLite consensus disorder prediction 384 410 - -
Pumo5g02867 783 Pfam Armadillo/beta-catenin-like repeat 623 660 IPR000225 GO:0005515
Pumo5g02867 783 Pfam Armadillo/beta-catenin-like repeat 580 619 IPR000225 GO:0005515
Pumo5g02867 783 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Pumo5g02867 783 MobiDBLite consensus disorder prediction 345 364 - -
Pumo5g02867 783 Coils Coil 184 204 - -
Pumo5g02867 783 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Pumo5g02867 783 MobiDBLite consensus disorder prediction 345 410 - -
Pumo5g02867 783 CDD RING-Ubox_PUB 242 294 IPR045210 -
Pumo5g02867 783 SMART arm_5 702 742 IPR000225 GO:0005515
Pumo5g02867 783 SMART arm_5 662 701 IPR000225 GO:0005515
Pumo5g02867 783 SMART arm_5 621 661 IPR000225 GO:0005515
Pumo5g02867 783 SMART arm_5 580 620 IPR000225 GO:0005515
Pumo5g02867 783 SMART arm_5 540 579 IPR000225 GO:0005515
Pumo5g02867 783 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Pumo5g02867 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Pumo5g02867 783 SUPERFAMILY RING/U-box 239 315 - -
Pumo5g02867 783 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Pumo5g02867 783 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Pumo5g02867 783 MobiDBLite consensus disorder prediction 365 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02867 Pumo-Chr5 75888202 75894374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02867 11 749 U-box Gene Family AT3G54790 51.200 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02867 - - gmx:100804684 1316.21