Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02857 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTACATCAACACTTATGGCCATGCTAATTGGCGTGCACTGCCCAAACTAGCTGGGCTATTAAGGTGTGGAAAGAGTTGTAGACTCCGGTGGATAAATTATCTGAGACCGGACATCAAAAGGGGCAACTTTACCAGAGAAGAAGAGGACACTATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATTGCGGCAAGGTTGCCAGGGAGAACAGACAACGAGATTAAAAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAATTACCAACAAAGCCACGACCCAAACAAACGAAGCAAAAAACAACCCAAGTTGGATGTGGACGCCTCCAAATCCAACCAAGACACCAAATTAGAACAACAAGACCCCGTGAATAATGTTCCCATTATTCATGCATCGAACTCAGAGGACATGATGATGCCACTATCTCCTCCACAATGTTCCAGCGACATGTCCTCCCTCACCACTAGTGACAACAATAGTAGCATTAATAATAATAATAATAATAATCATGATGATATGTCCTTAAATGTTAATGATATTGACACGCCGGAAAATAATCTTGCAATATTGGATGAGGATTTCTGGTCGGAAGTTTTGTCATCTGATAATTCCGATGAGACAAGTGAATTTCCGGCAATTGGTACTGTTGACTATGATCCGTTTCAAGCAATAGTGAACGAAGAAAGGGTACTTATAGATGCTAGTTCGTCGAATGTGTGCGACGGTGGCATGGACTTTTGGTGCAATGTTTACGCCAGAGCTGAGGAATTTACCCAGTTATTGGAATTGTGA 888 0.4291 MGRAPCCEKMGLKRGPWTPEEDQILINYINTYGHANWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYQQSHDPNKRSKKQPKLDVDASKSNQDTKLEQQDPVNNVPIIHASNSEDMMMPLSPPQCSSDMSSLTTSDNNSSINNNNNNNHDDMSLNVNDIDTPENNLAILDEDFWSEVLSSDNSDETSEFPAIGTVDYDPFQAIVNEERVLIDASSSNVCDGGMDFWCNVYARAEEFTQLLEL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02857 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g02857 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 240 - -
Pumo5g02857 295 CDD SANT 69 112 IPR001005 -
Pumo5g02857 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo5g02857 295 CDD SANT 16 61 IPR001005 -
Pumo5g02857 295 Gene3D - 11 67 - -
Pumo5g02857 295 MobiDBLite consensus disorder prediction 125 146 - -
Pumo5g02857 295 MobiDBLite consensus disorder prediction 114 203 - -
Pumo5g02857 295 FunFam MYB-related transcription factor 13 66 - -
Pumo5g02857 295 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Pumo5g02857 295 MobiDBLite consensus disorder prediction 170 203 - -
Pumo5g02857 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo5g02857 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g02857 295 FunFam Transcription factor MYB15 68 141 - -
Pumo5g02857 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g02857 295 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo5g02857 295 MobiDBLite consensus disorder prediction 147 163 - -
Pumo5g02857 295 Gene3D - 68 143 - -
Pumo5g02857 295 SMART sant 66 114 IPR001005 -
Pumo5g02857 295 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02857 Pumo-Chr5 75817123 75819165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02857 1 295 MYB Transcription Factor Family AT2G31180 47.651 2.88e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g02857 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02857 K09422 - gmx:100775603 472.626