Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02852 ATGGATTTAGATTTAGATTTTGATTCCCCTTTTTTTCTAAATCAAAACCTGAACTTCTTCCAAGAAAACTCCTCTGTTTGTGGAGACCCTTTTTCTTGGGACTACAACTTCGTTTTGGACGACATCTTCAACAACTTGAGCGACAATTCGTCACAATCACAAACCAAGGAATCATCATCCTCTGCCTCAGCCTCCAACGTTTCAAGTTCTGTTGCTAGCGTTGAGTTACAAGAAGTCTCATCTAACACGACAAATTACGAAGAAGTGAAAGAAGTACAACCACTACCACCATCGCAACCAGCAAAAGAGCCTAGGATGTACAGAGGGGTGAGGAAGAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGAGATTCCACTCGAAACGGCGTTCGAGTGTGGATTGGAACGTTTGACACAGCCGAAGCCGCGGCTTTGGCTTACGACCAAGCCGCGTTCTCCACCAGAGGGTCTCTTGCGGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAGTCTTTGAAAGACATGCCAAGTAAGCCCTGGGAAGAAGGTTCCTCCCCTGTCTTGGCGCTCAAGAGAAAACACACTATGAGGAGAAAGACCAATTCTAAGAAGAAGAGCAAGGTTGATCACAGGGAACAATTAGAGTTCAGCAGCAGTTCGCAGAATGTTCTGGTGTTCGAGGATTTGGGTGCTGAGTACCTAGAACAGCTCTTGAGTCTGACTTCTTCTTAG 732 0.4686 MDLDLDFDSPFFLNQNLNFFQENSSVCGDPFSWDYNFVLDDIFNNLSDNSSQSQTKESSSSASASNVSSSVASVELQEVSSNTTNYEEVKEVQPLPPSQPAKEPRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRRKTNSKKKSKVDHREQLEFSSSSQNVLVFEDLGAEYLEQLLSLTSS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02852 243 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Pumo5g02852 243 PANTHER DNA-BINDING DOMAIN 53 239 IPR044808 GO:0003700|GO:0009873
Pumo5g02852 243 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Pumo5g02852 243 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Pumo5g02852 243 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Pumo5g02852 243 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
Pumo5g02852 243 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Pumo5g02852 243 MobiDBLite consensus disorder prediction 82 108 - -
Pumo5g02852 243 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Pumo5g02852 243 FunFam Ethylene-responsive transcription factor 2 105 165 - -
Pumo5g02852 243 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02852 Pumo-Chr5 75762681 75763707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02852 76 239 AP2-EREBP Transcription Factor Family AT3G23240 56.024 1.02e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02852 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02852 K14516 - gmx:100779524 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02852 5 75762681 75763707 Pumo5g02852 5 75762681 75763707 ECH
Pumo5g02852 5 75762681 75763707 Pumo3g02449 3 37276140 37277307 PCT