Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02851 ATGGAGGGAGGGAGAGGAGTTGGGAATATTGGAAACGCAGCAGAGGTTAGGTACAGAGGGATTCGTAGGAGGCCATGGGGTAAGTTCGCAGCAGAGATTCGTGACCCCACAAGAAAAGGGGCTCGCATATGGCTTGGAACCTTTGACACCGCTGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTAGGGGTCACAAGGCCATACTCAACTTCCCAAATGAGTATGGTCACATCACTACTCCTAATTCAAACACGTATTCGACTTCATTGCCTCTTCCTTCTTCTTCTTCTTTCCCTTCCTACGCTGGTGAGGGTTCGTCACAACAACAACAACAACGAAATGATGATGACACTTTTGAATTGGAATGCTTGGACAACAAGTTGTTGGAAGAACTCCTTCAGGCGCCTGATGGTAGAGGCAACTCAAATTAA 441 0.4694 MEGGRGVGNIGNAAEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNEYGHITTPNSNTYSTSLPLPSSSSFPSYAGEGSSQQQQQRNDDDTFELECLDNKLLEELLQAPDGRGNSN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02851 146 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Pumo5g02851 146 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Pumo5g02851 146 MobiDBLite consensus disorder prediction 81 122 - -
Pumo5g02851 146 MobiDBLite consensus disorder prediction 81 117 - -
Pumo5g02851 146 FunFam Ethylene-responsive transcription factor 2 16 76 - -
Pumo5g02851 146 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Pumo5g02851 146 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Pumo5g02851 146 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Pumo5g02851 146 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Pumo5g02851 146 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Pumo5g02851 146 PANTHER DNA-BINDING DOMAIN 17 135 IPR044808 GO:0003700|GO:0009873
Pumo5g02851 146 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02851 Pumo-Chr5 75743785 75744444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02851 15 138 AP2-EREBP Transcription Factor Family AT3G23230 58.871 2.66e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02851 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02851 - - gmx:100778998 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02851 5 75743785 75744444 Pumo5g02851 5 75743785 75744444 ECH
Pumo5g02851 5 75743785 75744444 Pumo3g02447 3 37257643 37258268 PCT