Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02850 ATGAGTTCCCCTTTCTTTCTGCATTCAGATTGGAGCACAAGCACATTGATGGAGCCATCTGATATTTTGTTTGAATCATTTTCAAGCAAAGGTATCGATTATGACCCTTTCCATGACTCTCTTTCCTTTGATATGATTGACTTCTCAAGGGATCCACAGGAACCAAGTCAAGTGATTGAAGCAATAGAAGAGCAAACTAAGAAGTCCTATATTGGAGTAAGGAGAAGACCGTGGGGAAGATTTGCAGCGGAGATCAGAGACACAACAAGGAAAGGTGTAAGGGTTTGGCTTGGAACGTTTGATAGTGCAGAAGAAGCTGCTTTGGCTTATGACCAGGCTGCATTTACCATGAGAGGCTCAAGTGCAGTGCTGAATTTTCCAGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATGAATTATTTTGGTTGCAGCCAAGGGTGCTCTCCTGCATTAGAACTCAAAGAGAGGCACAGATCAAAGGCTAAGACAAGTAAAAGGAAAAAGGAATTGGAGGAATCGAGTGTTGTGGTGCTAGAGGACTTGGGAGCTGATTATCTGGAGTCACTTCTTAGCATATCGGATTAA 585 0.4274 MSSPFFLHSDWSTSTLMEPSDILFESFSSKGIDYDPFHDSLSFDMIDFSRDPQEPSQVIEAIEEQTKKSYIGVRRRPWGRFAAEIRDTTRKGVRVWLGTFDSAEEAALAYDQAAFTMRGSSAVLNFPVKRVKESLQEMNYFGCSQGCSPALELKERHRSKAKTSKRKKELEESSVVVLEDLGADYLESLLSISD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02850 194 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Pumo5g02850 194 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Pumo5g02850 194 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
Pumo5g02850 194 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Pumo5g02850 194 PANTHER DNA-BINDING DOMAIN 56 190 IPR044808 GO:0003700|GO:0009873
Pumo5g02850 194 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Pumo5g02850 194 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Pumo5g02850 194 FunFam Ethylene-responsive transcription factor 2 68 129 - -
Pumo5g02850 194 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Pumo5g02850 194 CDD AP2 68 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02850 Pumo-Chr5 75721557 75722141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02850 65 194 AP2-EREBP Transcription Factor Family AT3G23240 57.246 2.72e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02850 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02850 K14516 - gmx:100800600 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02850 5 75721557 75722141 Pumo5g03830 5 88265760 88266539 ECH
Pumo5g02850 5 75721557 75722141 Pumo3g01597 3 24645211 24646285 ECH
Pumo5g02850 5 75721557 75722141 Pumo5g02850 5 75721557 75722141 ECH