Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02849 ATGGATTTTGATTCTTCTCTATTTTCATACCAAAGTCTAGAATCCCATCTCAATTCATGGGAAGAGTTGTTTTCGTTCGACAACCTTCCCTTGAATGTAACGAATGAATCGTCCTTGGACTCCAAATCTTCATCCTCCAACGAAGGAATATTGGAGTCACAAGAAATCACCTCCAATATTATTATTATATGTGACGGCCACGTTGAAGAAAAATATTCACCACCGCCACTAGATGATGGTTCAAACATTCCAATGGCACCAGCATCTAAGCGAGAGAAGAGGCCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATAAGAGACCCCACAAGAAATGGGGTTCGAGTGTGGATTGGAACATTTGACACCGCTGAAGCAGCTGCTTTGGCTTATGACCAAGGAGCTTTCTTAACGAGGGGTGTTCTGGCTACCCTTAACTTTTCAGTGGAAGTGGTGATGGAGTCCCTTCAAAACATGGGTTTTAAGGCATTGAAAAATGGTCTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACAAAATCTAGGGCTAGCAGGAGTGGTAGTAAAAAGGTTAAAAGGGCTTGTAGCAACGGGAAATTGGACACTAATACTCAAAATGTGTTAGTGTTGGAGGATTTGGGTCCTGAATATCTAGAGCAACTTTTGAGCTTCACTTCCCCTGGTTCTTGGTGCTGA 720 0.4306 MDFDSSLFSYQSLESHLNSWEELFSFDNLPLNVTNESSLDSKSSSSNEGILESQEITSNIIIICDGHVEEKYSPPPLDDGSNIPMAPASKREKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEAAALAYDQGAFLTRGVLATLNFSVEVVMESLQNMGFKALKNGLSPLLELKRMHVMRTKSRASRSGSKKVKRACSNGKLDTNTQNVLVLEDLGPEYLEQLLSFTSPGSWC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02849 239 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Pumo5g02849 239 PANTHER DNA-BINDING DOMAIN 53 231 IPR044808 GO:0003700|GO:0009873
Pumo5g02849 239 Pfam AP2 domain 96 138 IPR001471 GO:0003700|GO:0006355
Pumo5g02849 239 CDD AP2 96 152 IPR001471 GO:0003700|GO:0006355
Pumo5g02849 239 FunFam Ethylene-responsive transcription factor 2 94 154 - -
Pumo5g02849 239 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Pumo5g02849 239 MobiDBLite consensus disorder prediction 73 96 - -
Pumo5g02849 239 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Pumo5g02849 239 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Pumo5g02849 239 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Pumo5g02849 239 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02849 Pumo-Chr5 75715325 75716044 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02849 66 238 AP2-EREBP Transcription Factor Family AT3G23240 49.432 2.16e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo5g02849 AP2 8.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02849 K14516 - gmx:100818907 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02849 5 75715325 75716044 Pumo5g02849 5 75715325 75716044 ECH
Pumo5g02849 5 75715325 75716044 Pumo3g03611 3 75993227 75994175 PCT
Pumo3g02444 3 37106038 37106673 Pumo5g02849 5 75715325 75716044 PCT