Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02847 ATGCACAATTGTGACACAATGGAGGACTTAAAGGAAAAGGTCAATGAAGGGGAACCAAAGCAAATTAAGTATAGAGGGGTAAGGAGGAGGCCATGGGGAAAGTTTGCTGCAGAAATTAGAGATTCAGCTAGACATGGGGCACGTGTGTGGCTTGGCACCTTTAACACTGCTGAAGAGGCTGCAAGGGCTTATGATCGTGCTGCCTTTGAGATGAGAGGTACTATGGCCATTCTCAACTTCCCAAATGAACACCTTCCTTGCAATGTGGCTTCTCTTGGCAAGAAGTCCTCATCATCTAACACTGAGCTTGGTAAACAAGTTGTAGTATTTGAGTGCTTGGATGACAAATTGTTAGAGGAACTCCTTGATTTTGATGGGAAAAGCATCAATTAA 393 0.4377 MHNCDTMEDLKEKVNEGEPKQIKYRGVRRRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFEMRGTMAILNFPNEHLPCNVASLGKKSSSSNTELGKQVVVFECLDDKLLEELLDFDGKSIN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02847 130 SMART rav1_2 23 87 IPR001471 GO:0003700|GO:0006355
Pumo5g02847 130 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Pumo5g02847 130 ProSiteProfiles AP2/ERF domain profile. 23 81 IPR001471 GO:0003700|GO:0006355
Pumo5g02847 130 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Pumo5g02847 130 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Pumo5g02847 130 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Pumo5g02847 130 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Pumo5g02847 130 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Pumo5g02847 130 PANTHER DNA-BINDING DOMAIN 17 95 IPR044808 GO:0003700|GO:0009873
Pumo5g02847 130 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02847 Pumo-Chr5 75695547 75696128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02847 20 123 AP2-EREBP Transcription Factor Family AT3G23230 59.322 1.19e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02847 AP2 1.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02847 - - gmx:100800069 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02847 5 75695547 75696128 Pumo5g02847 5 75695547 75696128 ECH