Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02846 ATGGCACTGAACCACAACCCCTCTTATTACAAGCTTGTATATCAAGCTCCCCCACCCATCAAAACCCATGCTAACACAATCCATCACACACCACAACCTGCTTCAGATTCTGCTTCTGCTTTTCCCATACTTGCCATCATTGTGCCAAGCATCTTTGTCACTGCTTTCTTACTCATCACCTACTTAACTCTTGTGACCAAATGCTGCTCAAACTGGCACCAAGTTAATCCATTGAGATGGATTTCAACACTACGAGCTCCACAGCATGAAGATCGAGACCCCTTTATAGCACTCTCTCCCATGATGTGGAACCAAGGACTTGATGAATCTGTCATCAGAGAAATCCCAACATTTGAATACATAAAAGAAGAAGCTGAGAAGAATCAAAGTGTGTGTGGCTGTGTGGTTTGTTTGACTGAGTTTCAAGAACATGATATGCTAAAAGTTCTGCCAAATTGTAGCCACGCCTTTCACTTGCATTGCATTGACATTTGGCTTCAAACCAATGCCAATTGCCCTCTTTGCAGATCAAGCATTGTTTCAGGCAACACACACTGTCCACTGGATCATGTCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAAATGCTCTCTTACATGGGCAGTGATGAAGACTTTGTGGTCATTGAACTTGGGGGAGAACATGGAGCAACACTGCCTCAGATGATGCAGCAAGAAAGAAGTGACACAAGGGAAAGAATAGTAGAGAGTAGAAGTCACTCTATTACAAGGAAGTGTCACCGTGTTTCCATCGTGGGAGATGAGTGTATTGATGTTAGGAAGAAAGATGAGCAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCGATGGATTCAGCTAATGATAGGCAAGTTTACTTAGATTTTCAAACCATGATACAACAGAATAATAGACATCAAAATGGGGCTAGTGCCAGTGAAGATTGTAATAGCAGAAGTCGAAGATCACTCTTTCCATTTCGTTATGGTCGGGGATAA 999 0.4244 MALNHNPSYYKLVYQAPPPIKTHANTIHHTPQPASDSASAFPILAIIVPSIFVTAFLLITYLTLVTKCCSNWHQVNPLRWISTLRAPQHEDRDPFIALSPMMWNQGLDESVIREIPTFEYIKEEAEKNQSVCGCVVCLTEFQEHDMLKVLPNCSHAFHLHCIDIWLQTNANCPLCRSSIVSGNTHCPLDHVIAPSSSPQDSQMLSYMGSDEDFVVIELGGEHGATLPQMMQQERSDTRERIVESRSHSITRKCHRVSIVGDECIDVRKKDEQFSIQPIRRSFSMDSANDRQVYLDFQTMIQQNNRHQNGASASEDCNSRSRRSLFPFRYGRG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02846 332 SMART ring_2 134 175 IPR001841 -
Pumo5g02846 332 FunFam E3 ubiquitin-protein ligase ATL6 98 182 - -
Pumo5g02846 332 SUPERFAMILY RING/U-box 111 183 - -
Pumo5g02846 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 181 IPR013083 -
Pumo5g02846 332 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Pumo5g02846 332 Pfam Ring finger domain 134 176 IPR001841 -
Pumo5g02846 332 PANTHER RING-H2 FINGER PROTEIN ATL16 18 332 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02846 Pumo-Chr5 75688237 75689442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02846 34 306 C3H Transcription Factor Family AT1G04360 43.831 9.18e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02846 K19041 - gmx:100809883 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02846 5 75688237 75689442 Pumo5g02846 5 75688237 75689442 ECH
Pumo5g02846 5 75688237 75689442 Pumo3g03608 3 75924538 75926373 PCT
Pumo3g02442 3 37083068 37084242 Pumo5g02846 5 75688237 75689442 PCT