Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02842 ATGCTTTATGTTATTTTCGTTGTAGTGCATTTGAAATGGGATAAGCATGGCATTTGTTGTTGCTGTCGTCGTTGTTTTGTATTGTGTAGTTGGCAGATCTTGACATGGGAGGATGCATACTATAACAATCCTGATGATTTTGACTCTTCAGAGAATAAGCACTGCCAGAAGACCTTGGAACAGATTGGTTGTGGGAAATTTTCACACAGCGCATTAGGGTTAGCAGTGGCTAAGATGTCATATCATGCATATTCATTAGGAGAAGGTATTGTTGGACAGGTAGCTGTTACTGGAAAACATAGGTGGATCTGTGCAGATAATCAAGTTTCAGGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAATTTTCTGCTGGAATCAGGACTATTGCTGTTGTTGCTGTAGTCCCACTTGGCGTTGTTCAGCTTGGCTCTCTAAATAAAGTGATTGAAGATATGGGGTTTGTAACTCATATCAGAAATCTTTTTTTGTCTACTCAAAATTACTCGATAGGCCAATGTCCTAGTCAAATACAGGGTAGTTTGAAGAGTTGTTCATCTCAGCTGGAGATATTGAAGGAAAATTTGTCTTCAGATATTATGCCTACTTGCTTTTACGATACACAGAAATCTATGAAGAGTGAAACAGCAGATGTTTTAATGCCCCTTCAATGTTCTGGGAGGAACTATGCACCTCATTCTGCTTGTGAGAAAATGTCTGATAATGTGGCCAAGCAAGAGGGGCCTGAATTGTACAGTGATGAAAGTTCCATTTTGCTTCAGTCGATATCCAATATGATGAATGTGGAGCATCAGGAATTTGAAGAGATGAAACCTCTACATGGGAGGAAGTGTGAAGGAGGAAGTAGTGGATGCAAAGATATGAGATTGGAATCAGAAAAAAATGTGTCATCATTTTTAAATGATTTTGTTACAGATAATGCTAGCTTCAGTGATTTAATATGTCCATCAGAAAAAGTCAGAGTTCATTCTGCATGCTTTCCTTCAGCTTTTCTTGATACAGTTGTTTGTGAAAGTGATAAGTTGCATTATGTGGATACTAACCAAAAGGGGGTGTTGAATTTCACCCAACCTTCAGATGCAAACTCCCAACAACATACAGAAAAGTCAAAGTTTCATACTGAGCCTTGTTCCAAGGATATCTCATACTTTCTAACCGAACCTTGTTACAAGGATACCTCACACACGTTGAAGTTCCCTGCTGGCTGTGAGCTACATGAAGCACTTGGACCAGCTTTTCTGAAAGGGAGTAAATGTTTTGATTGGCCAGAACAGGTTAATCAAGATATGAAAACTGTTGAAATGTCAGATGAGATTAGCACCAGCCAATTGACTTCTGAATCTCGTCCAGAACATCTTTTGGAAGCAATGGTGGCCAACATTAGCCATAGTAATAATGATGTTAATAGTGAATTATCATTTTGTACATCAATGCAATCTGCAATGGCCTCTGCAAAAGTTCATGAAGCTTCTATTCACAATGTGCATGCTATTAATTCAGAAGGCTATTCAATAGATCAGCTCTCTCTTGTCAGAGAGGACAAACACCATTCTTTGAGTTCATCATCAGGGATATGTGGTGTGATGTCCTCAAAAGGTGTTTCTTCTACATTTCCTAGTTCAAATAGTGGACAGCTTGAAAGGTCTTCTGAACCATCGAAGAACAGCAAAAAGAGGGCTAGGCCTGGGGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAACTGATCCAAGATCGTATCAAGGAGTTGAGAGAGCTGGTGCCAAATGGAGCCAAGTGCAGTATTGATTCACTACTGGAGCGCGCAATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAACATGCTGACAAGCTAACTGACTTTGCTGATACAAAGTCAAAGTTGCATCACATGGAAGCAGACATTCATGGATCCTCTAGTTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTAGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGTTTGGGCCTAACCATTTTGAAGGGCGCAACAAAAGCTCATGGTGAAAAGATATGGATATGCTTTGTTGTAGAGGGTCAAAACAACAGAAATGTACACAGATTGGATATCTTGTGGCCGCTTGTTCAAGTACTGCAATCCAAGAGCACAGTGTATTCACAATAA 2271 0.4051 MLYVIFVVVHLKWDKHGICCCCRRCFVLCSWQILTWEDAYYNNPDDFDSSENKHCQKTLEQIGCGKFSHSALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVSGSGLSFEFADGWQSQFSAGIRTIAVVAVVPLGVVQLGSLNKVIEDMGFVTHIRNLFLSTQNYSIGQCPSQIQGSLKSCSSQLEILKENLSSDIMPTCFYDTQKSMKSETADVLMPLQCSGRNYAPHSACEKMSDNVAKQEGPELYSDESSILLQSISNMMNVEHQEFEEMKPLHGRKCEGGSSGCKDMRLESEKNVSSFLNDFVTDNASFSDLICPSEKVRVHSACFPSAFLDTVVCESDKLHYVDTNQKGVLNFTQPSDANSQQHTEKSKFHTEPCSKDISYFLTEPCYKDTSHTLKFPAGCELHEALGPAFLKGSKCFDWPEQVNQDMKTVEMSDEISTSQLTSESRPEHLLEAMVANISHSNNDVNSELSFCTSMQSAMASAKVHEASIHNVHAINSEGYSIDQLSLVREDKHHSLSSSSGICGVMSSKGVSSTFPSSNSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTDFADTKSKLHHMEADIHGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGATKAHGEKIWICFVVEGQNNRNVHRLDILWPLVQVLQSKSTVYSQ 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02842 756 MobiDBLite consensus disorder prediction 546 560 - -
Pumo5g02842 756 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 32 753 IPR043561 GO:0003700|GO:0006355
Pumo5g02842 756 MobiDBLite consensus disorder prediction 561 584 - -
Pumo5g02842 756 MobiDBLite consensus disorder prediction 546 584 - -
Pumo5g02842 756 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 33 166 IPR025610 -
Pumo5g02842 756 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 583 625 IPR036638 GO:0046983
Pumo5g02842 756 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 570 619 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02842 Pumo-Chr5 75636266 75642634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02842 30 751 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 39.234 4.56e-141 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02842 - - ccaj:109796613 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02842 5 75636266 75642634 Pumo5g02842 5 75636266 75642634 ECH
Pumo5g02842 5 75636266 75642634 Pumo3g02438 3 37040001 37049096 PCT