Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02840 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTTCAACAACAGGTGGTGAATTTACAAGCACAGCTAGCTTGTCTCAGGGAACAAGCAGGTCAGATCTATCTCAATGCCTCTGTCACTGAAAACCCTAATGAGAAATACCTTGGAAAACCTACTACTTTCCCTCAAGATCTGCAAAGTTGGTTCCAGATGGAGAATTCCAACATGGCTTCACAATTTCTTCCTAACTTGTCCACCAATCCCTCAACACAGTATTATGGGAATACTAATACCCTCATGGAACCAAACCCTATTGGAAATTATGAAAATTCAGGAACCATAGAAGAAAGCATCTCATTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGTCCTATGACATGCAAAGGCAGTGGGGCCTTTCATGA 639 0.4319 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLACLREQAGQIYLNASVTENPNEKYLGKPTTFPQDLQSWFQMENSNMASQFLPNLSTNPSTQYYGNTNTLMEPNPIGNYENSGTIEESISFSSFEESCNSMSYDMQRQWGLS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02840 212 Coils Coil 87 107 - -
Pumo5g02840 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 169 - -
Pumo5g02840 212 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Pumo5g02840 212 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02840 Pumo-Chr5 75587091 75587835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02840 7 209 AS2 family AT3G58190 54.589 1.55e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g02840 LOB 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02840 K13945 K13944 gmx:100816960 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02840 5 75587091 75587835 Pumo5g02840 5 75587091 75587835 ECH
Pumo5g02840 5 75587091 75587835 Pumo3g02435 3 36997163 36998344 PCT