Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02839 ATGGCTTCTGCTAGTGGAAATGGTAGTGGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGAAGAAAGTGTGCTGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCAGCCATACACAAGGTCTTTGGTGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCCGTTGTCACAATCGCTTATGAGGCCCAGGCTCGTATTAGAGACCCTGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAGCAGGTGGCATGCTTGCAGGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCCAGAAACATTGAGAATAATCATCAGTGGCCAGGGAATAACAGTGTTGCAGGACAACCAATGAATCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATCAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGATTTTCCAATCCAAGCTAAGGAAAGATCATACAACAACAATGACTTGGGGGAGCTGCAAGAACTGGCACTCAGGATGATGAGGAACTGA 642 0.4704 MASASGNGSGSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNIENNHQWPGNNSVAGQPMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSREDFPIQAKERSYNNNDLGELQELALRMMRN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02839 213 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Pumo5g02839 213 Coils Coil 97 117 - -
Pumo5g02839 213 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Pumo5g02839 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02839 Pumo-Chr5 75577797 75579170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02839 3 213 AS2 family AT2G42430 56.504 3.04e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g02839 LOB 8.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02839 K13944 - gmx:100801508 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02839 5 75577797 75579170 Pumo5g02839 5 75577797 75579170 ECH
Pumo5g02839 5 75577797 75579170 Pumo3g02434 3 36971300 36972821 PCT