Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02833 ATGGACTTAAACTACCCAGAAGAGTGCTACTCCTCCAAGAGCTCCAGCGAAGAAACCAATTATGATGATATGGGAATTGGAAGATCCTACGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCTTGGGTGGACACATGAACATACACAGAAAAGAAAGGGCCAACAAGTCCAAACCCAGTTTCTCTCCTCATCCTTCAAGTTCTAACAAAGTTGATGGCATCATCATCAACAACTATGCAGATCTCGGGTTCTATTCACAGATTCCAAGCCTCTCCACTGCTCCTGATGCTAATAGCTTCCGTGAAGTTTTCTTTCCTGCCACTGCACGAAGTGTTAGGCCTTCTTCCCATGAGGTTTTGTTTGTGGAAAACCAACAGGGTCACGTGTTTGCGCAGGATTGGAGGAAGAGAAGTTTGAGCTTGTACACTAATCCGTTGTGTTTTCATGAAATTAAAGATAAGTTTGAAGACAGTGAAGAGAATGGCCTGGATTTGGAGCTGAGGCTTGGTCACCACCCATAG 531 0.4501 MDLNYPEECYSSKSSSEETNYDDMGIGRSYECIFCKRGFTTAQALGGHMNIHRKERANKSKPSFSPHPSSSNKVDGIIINNYADLGFYSQIPSLSTAPDANSFREVFFPATARSVRPSSHEVLFVENQQGHVFAQDWRKRSLSLYTNPLCFHEIKDKFEDSEENGLDLELRLGHHP 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02833 176 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Pumo5g02833 176 Pfam C2H2-type zinc finger 30 55 - -
Pumo5g02833 176 Gene3D Classic Zinc Finger 11 77 - -
Pumo5g02833 176 SUPERFAMILY beta-beta-alpha zinc fingers 28 57 IPR036236 -
Pumo5g02833 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Pumo5g02833 176 PANTHER OS07G0101800 PROTEIN 13 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02833 Pumo-Chr5 75537792 75538720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02833 30 94 C2H2 Transcription Factor Family AT5G43540 50.769 1.90e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02833 - - gmx:102664910 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02833 5 75537792 75538720 Pumo5g02833 5 75537792 75538720 ECH
Pumo5g02833 5 75537792 75538720 Pumo3g02430 3 36870403 36871324 PCT