Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02832 ATGGAAGGAAACTATTTGACCAGAAACATGCATAAAGGGGACAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTGAGCCTAACCCAACTCATCTTTCACCCTCCTCTCCATCATCATGTCTATCTAATAATAACCTTTTGAATTGTGCTCATGTTTCTCCACTTTTTAGCCCTTCTTTGAGTTTGTCTTCTTCACTGACCCCAGCTTCTCCCAATGGAGATAAGAAACCAAGACTTGCATCTTCCCAGCTTTTTTCTCTTTCGGTTCCTCAGAGCAGTGGGGAAATTAAGATTAGTAAGAACACAGGTAGTGGTTTAGGAGTTGAAGAAGTTCAGGGTTGTGCAATAGGGGAGGAATTCAAGGTTTCCAAGAGTAGTGAGCATAACATCAAGTTGGAGTTGGGAATAGGGTTGCTTAAACAACCAAAGGAGAAGTTAGATTTGGAGCTGAGATTGGGGCACTACTAG 624 0.4343 MEGNYLTRNMHKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSSWVSECPKPNPSIEPNPTHLSPSSPSSCLSNNNLLNCAHVSPLFSPSLSLSSSLTPASPNGDKKPRLASSQLFSLSVPQSSGEIKISKNTGSGLGVEEVQGCAIGEEFKVSKSSEHNIKLELGIGLLKQPKEKLDLELRLGHY 207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02832 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Pumo5g02832 207 SMART c2h2final6 32 54 IPR013087 -
Pumo5g02832 207 MobiDBLite consensus disorder prediction 62 89 - -
Pumo5g02832 207 PANTHER OS07G0101800 PROTEIN 18 206 - -
Pumo5g02832 207 Pfam C2H2-type zinc finger 32 56 - -
Pumo5g02832 207 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Pumo5g02832 207 Gene3D Classic Zinc Finger 21 72 - -
Pumo5g02832 207 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo5g02832 Pumo-Chr5 75523466 75524089 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02832 19 205 C2H2 Transcription Factor Family AT3G23130 39.267 3.15e-24 93.2
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g02832 zf-C2H2_6 6.7e-07 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02832 - - gmx:102660083 284.648
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02832 5 75523466 75524089 Pumo3g02428 3 36858901 36859536 PCT