Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g02832 | ATGGAAGGAAACTATTTGACCAGAAACATGCATAAAGGGGACAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTGAGCCTAACCCAACTCATCTTTCACCCTCCTCTCCATCATCATGTCTATCTAATAATAACCTTTTGAATTGTGCTCATGTTTCTCCACTTTTTAGCCCTTCTTTGAGTTTGTCTTCTTCACTGACCCCAGCTTCTCCCAATGGAGATAAGAAACCAAGACTTGCATCTTCCCAGCTTTTTTCTCTTTCGGTTCCTCAGAGCAGTGGGGAAATTAAGATTAGTAAGAACACAGGTAGTGGTTTAGGAGTTGAAGAAGTTCAGGGTTGTGCAATAGGGGAGGAATTCAAGGTTTCCAAGAGTAGTGAGCATAACATCAAGTTGGAGTTGGGAATAGGGTTGCTTAAACAACCAAAGGAGAAGTTAGATTTGGAGCTGAGATTGGGGCACTACTAG | 624 | 0.4343 | MEGNYLTRNMHKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSSWVSECPKPNPSIEPNPTHLSPSSPSSCLSNNNLLNCAHVSPLFSPSLSLSSSLTPASPNGDKKPRLASSQLFSLSVPQSSGEIKISKNTGSGLGVEEVQGCAIGEEFKVSKSSEHNIKLELGIGLLKQPKEKLDLELRLGHY | 207 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g02832 | 207 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 32 | 59 | IPR013087 | - | |
Pumo5g02832 | 207 | SMART | c2h2final6 | 32 | 54 | IPR013087 | - | |
Pumo5g02832 | 207 | MobiDBLite | consensus disorder prediction | 62 | 89 | - | - | |
Pumo5g02832 | 207 | PANTHER | OS07G0101800 PROTEIN | 18 | 206 | - | - | |
Pumo5g02832 | 207 | Pfam | C2H2-type zinc finger | 32 | 56 | - | - | |
Pumo5g02832 | 207 | SUPERFAMILY | beta-beta-alpha zinc fingers | 29 | 58 | IPR036236 | - | |
Pumo5g02832 | 207 | Gene3D | Classic Zinc Finger | 21 | 72 | - | - | |
Pumo5g02832 | 207 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 34 | 54 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g02832 | Pumo-Chr5 | 75523466 | 75524089 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g02832 | 19 | 205 | C2H2 Transcription Factor Family | AT3G23130 | 39.267 | 3.15e-24 | 93.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo5g02832 | zf-C2H2_6 | 6.7e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g02832 | - | - | gmx:102660083 | 284.648 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo5g02832 | 5 | 75523466 | 75524089 | Pumo3g02428 | 3 | 36858901 | 36859536 | PCT |