Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02821 ATGCCTGTCCACGCGCTTCCTATTCCGAAACACAGTCCGCCGCCGTCCAGGCCCAGGCCCAAGGAGGCCCATTTCAGGGGCGTCCGCAAGCGCCCCTGGGGCCGCTTCGCCGCCGAGATCCGCGACCCCTGGAAAAAGACCCGAAAGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCAGGGCCTACGACACCGCCGCCAGAACGCTACGTGGGCCCAAGGCCAAGACCAACTTCACCTACGTCGTTGCTCCCGCTCTCCACCTCCCTCCCGCGATGCTCGCTACTCCAGAAGCCCAGGTCCAGGCCCAGGCCCAAGAACAACTGGCCAGACAGGTCGAGTTCTGGGCCCCGCCTTTGTTCTTCGCGGCGGATGTAGCTTCCGGCGCGCCGGTGAGGTCGGAGTATAAGGGCTACAAGTTGGAGAATATTGCGGGCTTTGTGGTGAGCAAGGAGGAGCGGAAAGAGAAGAAGAAGCCGTTCTTGTTCGACCTTAACCAGCCGGCGCCGCTCTTCTGA 522 0.6379 MPVHALPIPKHSPPPSRPRPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVVAPALHLPPAMLATPEAQVQAQAQEQLARQVEFWAPPLFFAADVASGAPVRSEYKGYKLENIAGFVVSKEERKEKKKPFLFDLNQPAPLF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02821 173 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Pumo5g02821 173 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Pumo5g02821 173 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Pumo5g02821 173 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 103 - -
Pumo5g02821 173 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Pumo5g02821 173 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Pumo5g02821 173 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Pumo5g02821 173 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Pumo5g02821 173 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Pumo5g02821 173 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Pumo5g02821 173 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02821 Pumo-Chr5 75315086 75315957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02821 21 80 AP2-EREBP Transcription Factor Family AT5G44210 88.333 3.53e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g02821 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02821 K09286 - gmx:100816599 261.151