Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02816 ATGCAAGAAGTGAGCATGCGAGCGTGGTTCGTGCGAGCGTGCGAGCGAGGCAGCAACATGTCGAATCAGGTGGTGAAAGTGCGAAGGGACACGATTGCAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACGGATGAGGAGATAGAATGCTGTCCAATATGCAAGATTGATTTGGGTTGTCTTCCGATCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTTCCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCATCCTTGGTGGTCAGCACTCCAAGGGTATCTACACAGGCAACCATGACAGGAAGAAGAACGAAACCTACAAGAAAGGCTAGTGGTCTGCGGTCCACTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGATTTACTGGAAGATCATCCTGAGAGTTCGAGCTCACCTGACACTTCACATAAGTTTGCTCATAATTCTGGACAGAGTGTGTCCCCTTGTGAGGGTAGTCAATCCATACCCAATAAAGGATCAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATGTGCAAGGGTCTGATGCTAAATTAGAAACCAATCAAGTAAATGAGAGTGATTCTCAAGTTCAGAAAACCAAAAATAAGGAAAATAAACGTAAGGCAAAAATTGAGGATGAAAAGAGTAGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCAAATAAATTGCGCAGAATACGCAAGAAAAAGGAGCCAGTTTCTGGAGAATCTGGCATATCACCCCAAGCTGTGCTGGATTCTGCCAGCAATAGACTCTCAAGGACTGGTACAATATGGTTCTCCTTAGTGGCTTCTGAAAACCAGGAAGGAGATGCTCCCTTGCCCCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGTAGCGTACCGGTCTCTTTCATCCAAAAATACCTAATGAAGAAATTGGATTTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCCACATTGCAGCTATATAATTTGGTTGAGTTGTGGCTGGATACGGCGTCCACGTCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCCTGGCTTATGCTCGGAAGGTTCCACACCCTTGA 1344 0.4435 MQEVSMRAWFVRACERGSNMSNQVVKVRRDTIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEEIECCPICKIDLGCLPIEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASGLRSTSFSIEKPIKKEEDLLEDHPESSSSPDTSHKFAHNSGQSVSPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSNVQGSDAKLETNQVNESDSQVQKTKNKENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKKEPVSGESGISPQAVLDSASNRLSRTGTIWFSLVASENQEGDAPLPQIPSSYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLQLYNLVELWLDTASTSQRIPATIGSSAKDFVMVLAYARKVPHP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02816 447 MobiDBLite consensus disorder prediction 189 217 - -
Pumo5g02816 447 MobiDBLite consensus disorder prediction 168 188 - -
Pumo5g02816 447 MobiDBLite consensus disorder prediction 245 322 - -
Pumo5g02816 447 SUPERFAMILY RING/U-box 33 102 - -
Pumo5g02816 447 MobiDBLite consensus disorder prediction 131 166 - -
Pumo5g02816 447 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 20 443 IPR044807 GO:0004842
Pumo5g02816 447 CDD RING-HC_PCGF 36 78 - -
Pumo5g02816 447 MobiDBLite consensus disorder prediction 245 269 - -
Pumo5g02816 447 MobiDBLite consensus disorder prediction 128 223 - -
Pumo5g02816 447 Pfam Zinc finger, C3HC4 type (RING finger) 38 78 - -
Pumo5g02816 447 ProSitePatterns Zinc finger RING-type signature. 54 63 IPR017907 -
Pumo5g02816 447 MobiDBLite consensus disorder prediction 270 290 - -
Pumo5g02816 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 130 IPR013083 -
Pumo5g02816 447 ProSiteProfiles Zinc finger RING-type profile. 38 79 IPR001841 -
Pumo5g02816 447 SMART ring_2 38 78 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02816 Pumo-Chr5 75275262 75284319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02816 21 366 C3H Transcription Factor Family AT2G30580 54.179 1.10e-115 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02816 K16277 - gmx:100793731 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02816 5 75275262 75284319 Pumo5g02816 5 75275262 75284319 ECH
Pumo5g02816 5 75275262 75284319 Pumo3g02408 3 36544346 36550307 PCT