Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02808 ATGGAGGTTGGCCTGAAGAAGAAGGAGAAGAACATGGGGTTTGAGGAAACTGAGTTAAGGCTTGGACTGCCTGGAAACGGCACCACCGAAGAAGTGCTGAGGAAGAGAGGATTCTCTGAGACTGAAACTGAGGAGGATGACACTGCCACTGTGGATTTGATGCTTAATCTTTCTTCTAAGGAAGCAACTGCTGGTGGTGCAGATCCAGCTGATAACCACAAGGCTTTGCCTAAGGAGAAGACCCTTCTGCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCGCAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGCGTTGGAGAAGAGAGCGATAAGAACAGCAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCGAGAGCTCTCTGATTCTTTAGGAAAAATGTTCAGCTCCTTCACCATTGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAGCTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCAAAATGCAAGAACAGGAGCTAG 741 0.4818 MEVGLKKKEKNMGFEETELRLGLPGNGTTEEVLRKRGFSETETEEDDTATVDLMLNLSSKEATAGGADPADNHKALPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESDKNSNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02808 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 231 IPR003311 GO:0005634|GO:0006355
Pumo5g02808 246 ProSiteProfiles PB1 domain profile. 126 226 IPR000270 GO:0005515
Pumo5g02808 246 Pfam AUX/IAA family 16 233 IPR033389 -
Pumo5g02808 246 Gene3D - 120 237 - -
Pumo5g02808 246 MobiDBLite consensus disorder prediction 57 77 - -
Pumo5g02808 246 MobiDBLite consensus disorder prediction 1 16 - -
Pumo5g02808 246 MobiDBLite consensus disorder prediction 1 29 - -
Pumo5g02808 246 SUPERFAMILY CAD & PB1 domains 123 225 - -
Pumo5g02808 246 FunFam Auxin-responsive protein 121 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02808 Pumo-Chr5 75183030 75186429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02808 115 229 B3 DNA Binding Superfamily AT3G61830 33.043 5.33e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo5g02808 AUX_IAA 2e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02808 K14484 - gmx:100810013 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02808 5 75183030 75186429 Pumo5g02808 5 75183030 75186429 ECH