Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02807 ATGGGGAGCTACGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAGCCTGAGAAAAGTTCATGCAGTGGAGCTGTTGTTAGAAGAAACAAGAGATCTTCACCAGAATCCAGTGTGGAAGAGTCCAGGTGCAACTCCAATGGTTCTGCAGATTCCACAACCACAAGTGATCATGACCAAGACACTGTCCAACCTGCAAAGGTACAAGCTGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTATGCAACAGAAGAAGGTGGAGCAGGGTGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGGTAGATCTAAAGGTTTTCAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAGAGGGAGGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAAAATAATCAAAGGATCAGAAGCAAAGGGATTGGGTTGTTTATGA 606 0.4554 MGSYETELNLKATELRLGLPGCDEPEKSSCSGAVVRRNKRSSPESSVEESRCNSNGSADSTTTSDHDQDTVQPAKVQAVVGWPPIRSFRKNSMQQKKVEQGDGSGMYVKVSMAGAPYLRKVDLKVFNSYPELLMALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLKIIKGSEAKGLGCL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02807 201 MobiDBLite consensus disorder prediction 16 76 - -
Pumo5g02807 201 SUPERFAMILY CAD & PB1 domains 100 189 - -
Pumo5g02807 201 Gene3D - 99 201 - -
Pumo5g02807 201 ProSiteProfiles PB1 domain profile. 105 197 IPR000270 GO:0005515
Pumo5g02807 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 196 IPR003311 GO:0005634|GO:0006355
Pumo5g02807 201 MobiDBLite consensus disorder prediction 47 71 - -
Pumo5g02807 201 FunFam Auxin-responsive protein 100 201 - -
Pumo5g02807 201 Pfam AUX/IAA family 13 199 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02807 Pumo-Chr5 75161610 75163095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02807 96 198 B3 DNA Binding Superfamily AT2G46530 35.922 4.37e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo5g02807 AUX_IAA 2.7e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02807 K14484 - gmx:100792134 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02807 5 75161610 75163095 Pumo5g02807 5 75161610 75163095 ECH