Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02806 ATGGCGAATAACCCTTCCGACGCTCCCGCCGACGACTTCCTCGAACAAATCCTCGGCCTCCCGAACTTCGCTTCCGGCGACTCCGGCCTGTCCGCCGCCGATGTCGGCCTGGCCGGTACGGCCACTCCGGCTCCGATGATGCTGCAGCTCAACTCCGCCGACGCCAACGCTCACCTCGCCGGCGCTGCCTTCCACGCGCCGGTGTATCAGCTAGGGTTGAGCTTGGACCAAGGCAAAGGAGGCTTCTTGAAGCCCGAGGAAGCCTCCGCTAGCGGAAAGCGCTTTCGCGACGACGTCGTTGATGGCAGAGCTAAAAATGTTTTTCATGGACAACCCATGCCTACTGCTATACCTGCTGCTCCACATCCTCCAGCAATACGTCCTAGGGTGCGGGCCAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGACAGATAGAGCAGCCATGTTAGATGAGATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGTGGTGAAGGTGCGAGAAACCGGCCAGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTCATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCGGCAATATACCAGTCACAACCACCGGACACTTCTAGCATAGTCAAGCCTGAAACTAATCCTCCTTCATAG 879 0.5404 MANNPSDAPADDFLEQILGLPNFASGDSGLSAADVGLAGTATPAPMMLQLNSADANAHLAGAAFHAPVYQLGLSLDQGKGGFLKPEEASASGKRFRDDVVDGRAKNVFHGQPMPTAIPAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02806 292 Gene3D - 131 193 IPR036638 GO:0046983
Pumo5g02806 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Pumo5g02806 292 SMART finulus 142 191 IPR011598 GO:0046983
Pumo5g02806 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
Pumo5g02806 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 271 - -
Pumo5g02806 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Pumo5g02806 292 FunFam Basic helix-loop-helix transcription factor 131 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02806 Pumo-Chr5 75134017 75138569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02806 64 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.702 3.63e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02806 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02806 - - gmx:100797789 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02806 5 75134017 75138569 Pumo5g02806 5 75134017 75138569 ECH