Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02804 ATGGAGTCCCACGGCGGAGGACCCCTCCGTTCCCGCAGTTCGCAGTCCCCTTCTCCCTCCCACTCCGCCTCCGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTTGCGTCCGAGGACCACGCGCCTCCCTTCCCTCCCTCCTCCTTCTCCGCCGACACCCGCGACGGCGCCCTCACCTCCAATGACGACCTAGAGAGCATCTCCGCCCGCGGCGCCGATTCCGACTCCGACGACGACTCCGAGGACGCCGTGGTCGACGACGACGAGGACGACTACGACAACGACTCCTCCATGCGCACCTTCACTGCTTCCAGACTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAGACGGAAAACTCTGCCGTCAAAATTGAGAACTCCGACGGCGCCAAAGACCCCGGAACCGCCGGCACTGGTGGCGCCGCCGCTGCGGGATCCGTCCCCGGGATTGTGGTTAAGGAAGACCCGACTAAGATTTTTACTGATAATTTGCAAACGAGTGGGGCTTACACCGCTAGGGAAGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAGGCTCAAATTTGTTTGCCTTTCGAACGATGGTGTTGATGAGCATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCATGTTGTTGGAGGTATTACATATCGCCCATATGCTAGCCAGAAGTTCGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCAGATTGATGAATCACTTAAAACAGTATGCACGAGATATAGATGGTCTGACACATTTTCTCACATACGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGACAAAGATCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCACATCGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAAGTTTAAATGTTTCTACTGACAATGCTACTAATCAAAAACATTTGTCTGGGTTTATGCGTTCACTCCTAAAGTCAATGAGCGATCATGCTGATGCTTGGCCATTCAAGGATCCAGTTGATGCACGGGATGTTCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCTAAGAGGGTGGAATCAGAGCAATATTATGTAACATTTGAGATGTTTGTTGCGGATGTTAGAAGAATGTTTGCGAATGCTCGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTGCTACAAGGTTAGAAGCCCACTTTCAAAGCAAAGTGCAAGCAGGCCTCCAGACTGGTTCCAAAATTCAGTAG 1620 0.4772 MESHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEDDYDNDSSMRTFTASRLSNPPSAPRNTKLKTENSAVKIENSDGAKDPGTAGTGGAAAAGSVPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDIDGLTHFLTYADNNAVGYFIKQGFTKEIHLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRSLNVSTDNATNQKHLSGFMRSLLKSMSDHADAWPFKDPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRLEAHFQSKVQAGLQTGSKIQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02804 539 PANTHER GH11602P 87 536 IPR037800 GO:0004402
Pumo5g02804 539 Pfam Bromodomain 436 518 IPR001487 GO:0005515
Pumo5g02804 539 MobiDBLite consensus disorder prediction 1 148 - -
Pumo5g02804 539 CDD NAT_SF 237 291 - -
Pumo5g02804 539 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 198 349 IPR016181 -
Pumo5g02804 539 SUPERFAMILY Bromodomain 421 529 IPR036427 GO:0005515
Pumo5g02804 539 Pfam Acetyltransferase (GNAT) family 237 315 IPR000182 GO:0016747
Pumo5g02804 539 CDD Bromo_gcn5_like 434 530 - -
Pumo5g02804 539 FunFam Histone acetyltransferase KAT2A 187 351 - -
Pumo5g02804 539 SMART bromo_6 424 533 IPR001487 GO:0005515
Pumo5g02804 539 MobiDBLite consensus disorder prediction 53 68 - -
Pumo5g02804 539 Gene3D - 186 350 - -
Pumo5g02804 539 MobiDBLite consensus disorder prediction 8 32 - -
Pumo5g02804 539 ProSitePatterns Bromodomain signature. 448 506 IPR018359 -
Pumo5g02804 539 ProSiteProfiles Bromodomain profile. 443 514 IPR001487 GO:0005515
Pumo5g02804 539 Gene3D - 412 536 IPR036427 GO:0005515
Pumo5g02804 539 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 190 344 IPR000182 GO:0016747
Pumo5g02804 539 PRINTS Bromodomain signature 495 514 IPR001487 GO:0005515
Pumo5g02804 539 PRINTS Bromodomain signature 446 459 IPR001487 GO:0005515
Pumo5g02804 539 PRINTS Bromodomain signature 460 476 IPR001487 GO:0005515
Pumo5g02804 539 MobiDBLite consensus disorder prediction 98 128 - -
Pumo5g02804 539 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02804 Pumo-Chr5 75105533 75112554 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Pumo5g02804 Bromodomain 5.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02804 K06062 - gmx:100791610 961.059