Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02794 ATGTTCCCCACGGCTATTTCCAATTCAACTTCGTTGTCTGAGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACTTGGGAGGACTCAATCACGGGGTCTCAAACAATATTTCTCCTCAACAACAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATTGCCTTATCTCCGAAGGCCCTTTTGGCCACTAATAGATTTGTCTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGCCATAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCCCTGGGGGATCTGACAGGAATCAAGAAACACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCGAAAACCTGTGGTACTAGAGAATATAGATGCGACTGTGGAACCCTTTTTTCCAGGAAGGACAGTTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGCTGCTGCCGCGGCCACCACCACAACAAACCCATTCCAATCTCTCTATCTTTTCCAAAACCACCAAATCACCAGTTTCAACCAATGGGAATCGTCTCAAGAAAACCCTAACCCTAGCAGCATTGCCACTTCCCTCCACATGAAGCCAGAGTCTCAAACCTTACACAACCCCACCCTCTCTTCACTTCTCCAACAGCAACAACAAGAGCAACCACCCAACAAGGGCATGATAACCTCACCCTTCGGGAACCTCCACGTGGCCACGCAAGCAGCACCCGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATCACGGGCCCAGCCGGCCCTGTTGTTGTTGGACCACAGCGCGTAATGGGTCACGTGACCCACCTCGGCGCGGGCGAGTTCGGAACGGCGAGTCAACTCGACCCGGTGGTGGTGCCAGATAATAACAACTACATGAGAACAACGTTCCCCACGCGGAGCCTCAAGAGTGACCGTCTTACAAGGGACTTTCTGGGTCTCACGGCAGACGCTAACGGCGGAGTTGACGGCGCCGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGACGTTCGCGGGGGGCGTAGAGTACCACCAACCGCACCGTCAACATCACCACCACGCGCTTCTGAAGCCCCAACAAGGCTTTGGTTTCCTTGGGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTAG 1389 0.5191 MFPTAISNSTSLSEDASVSSGTKVQDLGGLNHGVSNNISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKALLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAAAAAATTTTNPFQSLYLFQNHQITSFNQWESSQENPNPSSIATSLHMKPESQTLHNPTLSSLLQQQQQEQPPNKGMITSPFGNLHVATQAAPATSAYMSATALLQKAATVGAAAITGPAGPVVVGPQRVMGHVTHLGAGEFGTASQLDPVVVPDNNNYMRTTFPTRSLKSDRLTRDFLGLTADANGGVDGAAVDVSTNVKDMLTFAGGVEYHQPHRQHHHHALLKPQQGFGFLGTTTAPETWGNC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02794 462 Gene3D Classic Zinc Finger 111 201 - -
Pumo5g02794 462 MobiDBLite consensus disorder prediction 1 49 - -
Pumo5g02794 462 SMART c2h2final6 118 148 IPR013087 -
Pumo5g02794 462 SMART c2h2final6 77 99 IPR013087 -
Pumo5g02794 462 SMART c2h2final6 153 173 IPR013087 -
Pumo5g02794 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Pumo5g02794 462 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Pumo5g02794 462 Gene3D Classic Zinc Finger 73 100 - -
Pumo5g02794 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 417 IPR031140 -
Pumo5g02794 462 MobiDBLite consensus disorder prediction 1 60 - -
Pumo5g02794 462 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Pumo5g02794 462 FunFam protein indeterminate-domain 12-like 56 124 - -
Pumo5g02794 462 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02794 Pumo-Chr5 74958639 74963200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02794 15 451 IDZ Gene Family AT4G02670 49.451 4.93e-128 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g02794 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02794 K25870 - gmx:100788975 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02794 5 74958639 74963200 Pumo3g01979 3 30940739 30944913 PCT
Pumo3g02380 3 36129232 36134330 Pumo5g02794 5 74958639 74963200 PCT