Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g02793 | ATGAACTACTTGTACCCTGTGAAAGAAGAGTACTTGGAATCACCACCACCATCATCACCAACGGGAGTTGATGAGTCAGCAATGGCTCCTCCTCCGAGGCCAATGGAGGGGCTTCACGAAATAGGGCCACCCCCATTTCTGACCAAGACTTACGATGCAGTGGAGGACCCCACCACTAGCCACATACTTTCATGGAACAGAGGAGGTGCCAGCTTTGTGGTTTGGGATCCACACGCTTTCTCCAGAGAACTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGGCAACTAAACACTTACGGTTTTAGAAAAATTGACTCAGATAGGTGGGAGTTTGCAAATGAAGGATTCCTTAGAGGGCACAGGCACCTGTTGGCTAACATAAGGAGAAGGAAACATCCTTCTCAGCCTTCTTCTTCACAACAAGCACAAGGTCACTGTGTTGAAGTTGGCCGTTTTGGACTTGATGAAGAGGTTGATCGTTTGAGGCGTGACAAGCATGTTTTGATGATGGAGCTTGTGAGGCTGAGACAGCAGCAACAGAACACCAGGTCCTACCTTCAAGCAATGGAGGAGAGGCTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAGAGGAGAAGGCCAATTGAGCAAGGGCCAAGTGGGGTTGGAGAATCAAGCAGTGGAAGGAGCAGTGTCAAAGTTGAGCCTCTAGTGTTTGGGGAATATGGTTTTGGAGTATCAGAGTTGGAAGTGCTTGCTATGGAGATGCAAGGTTATGGTAGGGGGAGGAGGGAACAGGAGGAGGAGGAGCCTGAGGTACTAGAATCACAAGAGAGGCTGGAGAAAGAGCTTGATGAAGGGTTCTGGGAAGAACTTTTCGGTGAGGGTTTTGAGGGTGAATTAGATATTCCAACTTCCCAAGACCAAGATGAAGATGTCAATGTGTTGGCCAATCGCTTTGGTTACTTGGGTTCAAGTCCTAAATGA | 1083 | 0.4765 | MNYLYPVKEEYLESPPPSSPTGVDESAMAPPPRPMEGLHEIGPPPFLTKTYDAVEDPTTSHILSWNRGGASFVVWDPHAFSRELLPRYFKHNNFSSFVRQLNTYGFRKIDSDRWEFANEGFLRGHRHLLANIRRRKHPSQPSSSQQAQGHCVEVGRFGLDEEVDRLRRDKHVLMMELVRLRQQQQNTRSYLQAMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGPSGVGESSSGRSSVKVEPLVFGEYGFGVSELEVLAMEMQGYGRGRREQEEEEPEVLESQERLEKELDEGFWEELFGEGFEGELDIPTSQDQDEDVNVLANRFGYLGSSPK | 360 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g02793 | 360 | Gene3D | - | 39 | 136 | IPR036388 | - | |
Pumo5g02793 | 360 | SUPERFAMILY | "Winged helix" DNA-binding domain | 42 | 135 | IPR036390 | - | |
Pumo5g02793 | 360 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Pumo5g02793 | 360 | MobiDBLite | consensus disorder prediction | 233 | 249 | - | - | |
Pumo5g02793 | 360 | FunFam | Heat shock transcription factor 1 | 39 | 136 | - | - | |
Pumo5g02793 | 360 | ProSitePatterns | HSF-type DNA-binding domain signature. | 85 | 109 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo5g02793 | 360 | MobiDBLite | consensus disorder prediction | 233 | 262 | - | - | |
Pumo5g02793 | 360 | Coils | Coil | 163 | 197 | - | - | |
Pumo5g02793 | 360 | SMART | hsfneu3 | 42 | 135 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo5g02793 | 360 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 32 | 279 | IPR027725 | - | |
Pumo5g02793 | 360 | PRINTS | Heat shock factor (HSF) domain signature | 84 | 96 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo5g02793 | 360 | PRINTS | Heat shock factor (HSF) domain signature | 46 | 69 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo5g02793 | 360 | PRINTS | Heat shock factor (HSF) domain signature | 97 | 109 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo5g02793 | 360 | Pfam | HSF-type DNA-binding | 46 | 135 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo5g02793 | 360 | Coils | Coil | 225 | 245 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g02793 | Pumo-Chr5 | 74941766 | 74943983 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g02793 | 19 | 358 | HSF | AT3G22830 | 53.316 | 2.24e-128 | 372 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Pumo5g02793 | HSF_DNA-bind | 6.2e-32 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g02793 | K09419 | - | gmx:100794264 | 563.148 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo5g02793 | 5 | 74941766 | 74943983 | Pumo3g02379 | 3 | 36117652 | 36119064 | PCT |