Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02793 ATGAACTACTTGTACCCTGTGAAAGAAGAGTACTTGGAATCACCACCACCATCATCACCAACGGGAGTTGATGAGTCAGCAATGGCTCCTCCTCCGAGGCCAATGGAGGGGCTTCACGAAATAGGGCCACCCCCATTTCTGACCAAGACTTACGATGCAGTGGAGGACCCCACCACTAGCCACATACTTTCATGGAACAGAGGAGGTGCCAGCTTTGTGGTTTGGGATCCACACGCTTTCTCCAGAGAACTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGGCAACTAAACACTTACGGTTTTAGAAAAATTGACTCAGATAGGTGGGAGTTTGCAAATGAAGGATTCCTTAGAGGGCACAGGCACCTGTTGGCTAACATAAGGAGAAGGAAACATCCTTCTCAGCCTTCTTCTTCACAACAAGCACAAGGTCACTGTGTTGAAGTTGGCCGTTTTGGACTTGATGAAGAGGTTGATCGTTTGAGGCGTGACAAGCATGTTTTGATGATGGAGCTTGTGAGGCTGAGACAGCAGCAACAGAACACCAGGTCCTACCTTCAAGCAATGGAGGAGAGGCTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAGAGGAGAAGGCCAATTGAGCAAGGGCCAAGTGGGGTTGGAGAATCAAGCAGTGGAAGGAGCAGTGTCAAAGTTGAGCCTCTAGTGTTTGGGGAATATGGTTTTGGAGTATCAGAGTTGGAAGTGCTTGCTATGGAGATGCAAGGTTATGGTAGGGGGAGGAGGGAACAGGAGGAGGAGGAGCCTGAGGTACTAGAATCACAAGAGAGGCTGGAGAAAGAGCTTGATGAAGGGTTCTGGGAAGAACTTTTCGGTGAGGGTTTTGAGGGTGAATTAGATATTCCAACTTCCCAAGACCAAGATGAAGATGTCAATGTGTTGGCCAATCGCTTTGGTTACTTGGGTTCAAGTCCTAAATGA 1083 0.4765 MNYLYPVKEEYLESPPPSSPTGVDESAMAPPPRPMEGLHEIGPPPFLTKTYDAVEDPTTSHILSWNRGGASFVVWDPHAFSRELLPRYFKHNNFSSFVRQLNTYGFRKIDSDRWEFANEGFLRGHRHLLANIRRRKHPSQPSSSQQAQGHCVEVGRFGLDEEVDRLRRDKHVLMMELVRLRQQQQNTRSYLQAMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGPSGVGESSSGRSSVKVEPLVFGEYGFGVSELEVLAMEMQGYGRGRREQEEEEPEVLESQERLEKELDEGFWEELFGEGFEGELDIPTSQDQDEDVNVLANRFGYLGSSPK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02793 360 Gene3D - 39 136 IPR036388 -
Pumo5g02793 360 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Pumo5g02793 360 MobiDBLite consensus disorder prediction 1 34 - -
Pumo5g02793 360 MobiDBLite consensus disorder prediction 233 249 - -
Pumo5g02793 360 FunFam Heat shock transcription factor 1 39 136 - -
Pumo5g02793 360 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g02793 360 MobiDBLite consensus disorder prediction 233 262 - -
Pumo5g02793 360 Coils Coil 163 197 - -
Pumo5g02793 360 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g02793 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 279 IPR027725 -
Pumo5g02793 360 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g02793 360 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g02793 360 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g02793 360 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo5g02793 360 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02793 Pumo-Chr5 74941766 74943983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02793 19 358 HSF AT3G22830 53.316 2.24e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo5g02793 HSF_DNA-bind 6.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02793 K09419 - gmx:100794264 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02793 5 74941766 74943983 Pumo3g02379 3 36117652 36119064 PCT