Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02787 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTGCATTTGGTTCTGCCCTACTTGTGAGGCACAAGCACGAAAAGAAAAAGTATGTCCTTAAAAAGATCCGTCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTAACTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAATTGCTGATGGCACTCGATTACTTGCATGTAAATCATATTCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCGGTTGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTTTTGACATACAATCATTGATTATCAAAATAAACAAGTGTATAGTAGCTCCCATGCCAACTATGTATTCTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTGCAGAATTGCTAAATCATCCGCATCTTCAGCCTTACATTCATAAAATTCACCTAAAATTAAATAGCCCCAGAAGAAGTACATTTCCATTCCAATGGCCTGAGTCAAATTACGTAAGGAGAACTCGGTTCGTAGAGCCAGAGTCTGTTTCTACTCTTTCTGACCAATTTAAATGCTTGTCATTTAGCAATGACAGGGCCTTGAATCTTAGTCTTTCTGGAACTGAACTAGTTTCTCAGTGTTCCACTCAAAGGGCACATGGATTATCCACTTGTTCAGAAGAGAAGATCTATGAACTATCTGTAGGTTGTGTCCGTAACAAATGCAATACTGACAAATCAAAAGCCACAAAGTTCTCAACTGTTGAGAGAACACCAAGATCGAGAGCAGTCACGGTTTCTGCCACTACCAAAAGGCAAACAATGGCACCATCAAAGACAACCCATTCTGGTCCAAAACGTGATTCACTTCCAGTGTCTCATGCACGACGTGGAAAGTTTTCCACACCACCAAGAGCCAGGGGCAAAGCAAACTTGTACACCAATGTTGGCCACCTTGGAAGTGTAGACTCTCTTGATGTTTCTGTTAATGCACCGCAAATTGACAAGATTGCTGAATTCCCAATGGCTTTCTGTGAGGATCCTTTTTTCCCTGTCGGTGGACCATCATCAACATCAGCACGCTGCTCTTCTAGCTCAGCAGGGAGCACTGCTGATTGCTCCATCACAAAGGACAAGTGTACAATCCAGGAGGACAAAGTCACTGTTTGGCCTGGTCCAAAGGGCACTGAATGCTCTCCTGAGCATGTCAAAGCTTGTGTTTCAAGCCGTTCCTCTGCTGACTTGGATCAACCCCGGTTTGACACCTCGTCATACCAGCAACGCGCGGAGGCGTTGGAGGGGTTGCTGGAGTTCAGTGCCAGGCTCCTACAACAGCAGAGGTTTGATGAGCTTGGGGTGTTGCTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAACAAACTGCTGTCTAA 1791 0.4361 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQSLIIKINKCIVAPMPTMYSAAFRGLVKSMLRKNPELRPTAAELLNHPHLQPYIHKIHLKLNSPRRSTFPFQWPESNYVRRTRFVEPESVSTLSDQFKCLSFSNDRALNLSLSGTELVSQCSTQRAHGLSTCSEEKIYELSVGCVRNKCNTDKSKATKFSTVERTPRSRAVTVSATTKRQTMAPSKTTHSGPKRDSLPVSHARRGKFSTPPRARGKANLYTNVGHLGSVDSLDVSVNAPQIDKIAEFPMAFCEDPFFPVGGPSSTSARCSSSSAGSTADCSITKDKCTIQEDKVTVWPGPKGTECSPEHVKACVSSRSSADLDQPRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKQTAV 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02787 596 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02787 596 Gene3D Transferase(Phosphotransferase) domain 1 86 301 - -
Pumo5g02787 596 MobiDBLite consensus disorder prediction 382 424 - -
Pumo5g02787 596 SUPERFAMILY Protein kinase-like (PK-like) 1 314 IPR011009 -
Pumo5g02787 596 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Pumo5g02787 596 MobiDBLite consensus disorder prediction 382 402 - -
Pumo5g02787 596 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Pumo5g02787 596 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Pumo5g02787 596 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 552 - -
Pumo5g02787 596 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02787 596 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g02787 596 CDD STKc_Nek 3 258 - -
Pumo5g02787 596 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Pumo5g02787 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02787 Pumo-Chr5 74832566 74839914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02787 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 7.13e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo5g02787 Pkinase 3.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02787 K08857 - gmx:100792678 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02787 5 74832566 74839914 Pumo5g02787 5 74832566 74839914 ECH