Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02774 ATGAGTGAGGATTCGCGGTCTCAGACAAGGCTCGAGAAACAGGATAATGATGAAAAGGGGGTTGAGGAGAGGGGGAATGGAGAATGCTCAAGGAATCTCGAGGTGTTTCTCGGCGATTATACAATGATAGAGACGACAAAATGTTCAGGGGTTCCTGTGTTGTTTGGTGGTGGAGTATTGTCCTCGGTGTTAAATAGGATCGCTACTATGGAAAAGCAATTAGTTAGTGGTGAGTTGCAATTTGATAGTGAAAGTTTAAACCCTCCAAATAATGGCCACCACAAAGATAAGATTCTGGGGCTGGAACTTATTGCAAGACTTCAACGCCGCACCAGAGGTTCAAGACGTTTAACTAGGATACATGACGTGGATTTGACTAACGAAACCGAGGATATATGCCCCAGGAGATCCTTGAAGAAAGAAATACTAGAAGAGATGCGGGGAATTTCTCAGCTCATGGTGAGTCAATCTGAGAAAGTTGTGGCACATGAGGAAAAGGATGAAAAAGTGAACAAAAATGTGAAAAAAGAGGTACCTTCTGGTGCTAGAAAGACCAGGTCCAGTAGGAAGCTGAACACAGGAAAACGAACTGTGCTTTCCTGGTTGATTGACATTGGGAAAATACGGCTACTTGTGTCCATTTCACAGTTTGAAGCTCATTCAAGGAGACAAATCTCTGATGATCCAATGGAGAATAATATGTCTGAGTCTGATCCACTCAAGAATATGTGTGTGAATAGAGGACGTTCTCTTTTGCAATGCATGGCAGAAGCATGGAACAGACAACATAAATCTTCTACTGCTAAATTTTATCACAAAGTTCGTGTCGGGGGAGATGACCAAAACGATGTTATTTGTAGTCTCTGTGGGGAACGCGGAGACCTCATCAGTTGTGACAGTTGCCCATCAACTTTCCATCAAAGCTGCTTGGATATACAAACACTTCCATCAGGTGACTGGCACTGCATGTATTGCTGTTGCAAATTTTGTGGGTTGTATGGTGGAAAGCAAAAGGGCAGCTTTCAGTTATCCACATGCCGTCTATGCGAGCAAAGATATCACCAATCCTGTCTTGAGTCTAGTGGAGCCAATACTGCTCATTCTAAACAGTCATCCTTATGTGGAAACGGGTGTAAAGAGTTATATGAGAGACTTGAAAAGCTTCTTCGGGTTAAACATAATATAGAAGATGGATTTTCTTGGCCTCTTATTTGCCGGTCAAATGTTGATTCTAACGCCTGGCAGATAGAACCCCGTATGGTTGAATGTAATGCCAAACTCGCTGTTGCGTTATCGGTAATGAATGAGGGTTTCATGCCATGCATTGATGAGGGAAGCAAGATTAATCTGATCCACAGTGTTGTATATAATTGTGGGTCAAACTTCCCTCGCGTGGATTGTAAGAGATTCATTACTGCAATTCTAGAGAGAGATGATGAGATTACCAGCGTTGCATCAATCAGGATCCATGGAAACCAACTAGCAGAGATGCCATTTGTTGCGACCCGCTCTGTTTACTGGCGGAAAAGAATGTTCAGCTGA 1542 0.4293 MSEDSRSQTRLEKQDNDEKGVEERGNGECSRNLEVFLGDYTMIETTKCSGVPVLFGGGVLSSVLNRIATMEKQLVSGELQFDSESLNPPNNGHHKDKILGLELIARLQRRTRGSRRLTRIHDVDLTNETEDICPRRSLKKEILEEMRGISQLMVSQSEKVVAHEEKDEKVNKNVKKEVPSGARKTRSSRKLNTGKRTVLSWLIDIGKIRLLVSISQFEAHSRRQISDDPMENNMSESDPLKNMCVNRGRSLLQCMAEAWNRQHKSSTAKFYHKVRVGGDDQNDVICSLCGERGDLISCDSCPSTFHQSCLDIQTLPSGDWHCMYCCCKFCGLYGGKQKGSFQLSTCRLCEQRYHQSCLESSGANTAHSKQSSLCGNGCKELYERLEKLLRVKHNIEDGFSWPLICRSNVDSNAWQIEPRMVECNAKLAVALSVMNEGFMPCIDEGSKINLIHSVVYNCGSNFPRVDCKRFITAILERDDEITSVASIRIHGNQLAEMPFVATRSVYWRKRMFS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02774 513 ProSitePatterns Zinc finger PHD-type signature. 286 325 IPR019786 -
Pumo5g02774 513 MobiDBLite consensus disorder prediction 1 26 - -
Pumo5g02774 513 SMART PHD_3 329 379 IPR001965 -
Pumo5g02774 513 SMART PHD_3 285 326 IPR001965 -
Pumo5g02774 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 380 IPR013083 -
Pumo5g02774 513 ProSiteProfiles Zinc finger PHD-type profile. 283 328 IPR019787 -
Pumo5g02774 513 PANTHER PHD FINGER PROTEIN 12 130 511 IPR042163 GO:0003714|GO:0045892
Pumo5g02774 513 SUPERFAMILY FYVE/PHD zinc finger 275 333 IPR011011 -
Pumo5g02774 513 Pfam Tify domain binding domain 212 258 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02774 Pumo-Chr5 74637246 74642539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02774 195 513 PHD Transcription Factor Family AT4G14920 41.341 5.28e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02774 - - gsj:114405256 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02774 5 74637246 74642539 Pumo5g02774 5 74637246 74642539 ECH
Pumo5g02774 5 74637246 74642539 Pumo3g02352 3 35802527 35803252 PCT