Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02747 ATGGCTGCACCGCCAAATAGCAAGCTTCAAAGCATGTTGCGGGCTGCAGTGCAATCGGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAACAAGGGATATTGACGTGGGGTGATGGATACTACAACGGAGCAATTAAGACAAGGAAGACAGTTCAAGCAATGGAGGTTAGCACTGAGGAAGCGTCTCTGCAAAGAAGCGAGCAACTTAGAGAGTTATATGAATCATTGTCTGCTGGGGAAGCAAATGCGCAAACTCGAAGGCCATGTGCTGCTTTGTCGCCGGAGGATCTAACGGAATCCGAATGGTTCTATTTGTTGTGTATCTCTTTCTCCTTTCAACCTGGTGTCGGGTTACCCGGAACAGCATATGCCAGGAGACAGCATTTATGGCTCAGTGGTGCAAACGAAGTAGATAGCAAAACATTTTCAAGAGCTATTCTTGCCAAGAGTGCTCATGTACAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCATCGTTGAGTTGGGCACAACAGATAAGGTGGAAGAAGACCTTAATTTGATCCAACACATAAAGAGCTTCTTCATAGATCCTCCTCAGACGGCAAAGCCTGCACTATCAGAGCACTCCACCTCCAATCCCACTTCTTCTTCTTCATACCCTCTTCTCACTGCCACTGATATTCCCATCCAAAACGTTAATAAAGGAGAAGAAGAAGCTATAATATTGAATAATAATAATAATTCGGAAGCAGCAGAATTAGCAGTAGTCCCTCACAGTTTCATAGCGAGCGAGCTAATGGAGCTGGACGCCTTGGAGGAATTCAGGGTGGGATCACCTGGAGATGCCTCCAACCACTTGGATTCCTTCCCCGCAGAGGAATCTATGGCACTCTGTTCAGCCGGCTTGGAGCTCCTCCAACTTCAACTACCACCAGATCCAGCACATCCTCCATCAGAAAACCTAGCACAAGGCGACACAGACACCCACTACTCTCAAACAGTGTCCAGCATCCTTCAAAAGAACTCCGGGTGGTGGCCGGAATCACCCTCCGTCAACCACCTCACCGATTCCTTCCAATCAGCTTTCAACAAGTGGAACTCCGGCTCCGACGACTACCACCACCACTTCCACTTGGCGGTTGCCGACGTCACCTCCCAGTGGCTCCTCAAGTACATTCTGTTCAGCGTCCCTTACTTGCACGCCAACCGGCTCAAGGGCAAGGGCGCTCCACCATACGAGACGAGCCACGTGATGGCGGAGCGCCGCCGGAGGGAGAAGCTGAACGAGAGGTTTCTCATTCTGCGCTCGATGGTGCCTTTCGTTACCAGAATGGACAAGGCGTCCATTCTGGGAGACACCATCGAGTACATCAAGCAGTTGAGGGAGAAGATTGAGAGCCTCGAGGCGTGTGAGCTCACGCGCCTCGAGGGGAAGAGGAGGGCGAGGGAGGTAGAGGTTTCGATCATAGAGAGCGACGCGCTGCTGGAGGTGGAGTGTGTGCATAGGGAAGGGTTGTTGCTGGATGTGATGACAGTGTTGAGGGAGTTAGGGGTGGAAGTGATGATGGTGCAGTCTTGGGTTAAGGATGATGGGGTGTTTGTGGCGGAGATGAGAGCAAAGGTGAAGGAAAATGGTAATGGGAAGAAGGCTAGCATTGTGGAAGTGGAAAATGCCCTTAACCAGATTATACCACCCCATCATGAGCCTTACACACTTGCTTCCAATGATCATTTTTAA 1728 0.5041 MAAPPNSKLQSMLRAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGEANAQTRRPCAALSPEDLTESEWFYLLCISFSFQPGVGLPGTAYARRQHLWLSGANEVDSKTFSRAILAKSAHVQTVVCIPVLEGIVELGTTDKVEEDLNLIQHIKSFFIDPPQTAKPALSEHSTSNPTSSSSYPLLTATDIPIQNVNKGEEEAIILNNNNNSEAAELAVVPHSFIASELMELDALEEFRVGSPGDASNHLDSFPAEESMALCSAGLELLQLQLPPDPAHPPSENLAQGDTDTHYSQTVSSILQKNSGWWPESPSVNHLTDSFQSAFNKWNSGSDDYHHHFHLAVADVTSQWLLKYILFSVPYLHANRLKGKGAPPYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEACELTRLEGKRRAREVEVSIIESDALLEVECVHREGLLLDVMTVLRELGVEVMMVQSWVKDDGVFVAEMRAKVKENGNGKKASIVEVENALNQIIPPHHEPYTLASNDHF 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02747 575 Gene3D - 409 469 IPR036638 GO:0046983
Pumo5g02747 575 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 408 457 IPR011598 GO:0046983
Pumo5g02747 575 PANTHER TRANSCRIPTION FACTOR TT8 3 561 - -
Pumo5g02747 575 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Pumo5g02747 575 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 411 466 IPR036638 GO:0046983
Pumo5g02747 575 SMART finulus 414 463 IPR011598 GO:0046983
Pumo5g02747 575 Pfam Helix-loop-helix DNA-binding domain 411 458 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02747 Pumo-Chr5 74191028 74203954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02747 327 560 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.934 1.61e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g02747 bHLH-MYC_N 1.9e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02747 - - gmx:100802733 901.353